Pierrick Roger
| Snapshot Date: 2024-07-05 14:00 -0400 (Fri, 05 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: devel |
| git_last_commit: dfe3f6c |
| git_last_commit_date: 2024-04-30 11:37:31 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-07-06 11:42 -0400 (Sat, 06 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4643 |
| palomino6 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4414 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4442 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4391 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 3833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 197/2243 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.11.0 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino6 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | ERROR | ||||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.11.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.11.0.tar.gz |
| StartedAt: 2024-07-05 21:59:30 -0400 (Fri, 05 Jul 2024) |
| EndedAt: 2024-07-05 22:00:14 -0400 (Fri, 05 Jul 2024) |
| EllapsedTime: 43.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.11.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.20-bioc/meat/biodbChebi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: aarch64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Ventura 13.6.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’ * installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-07-05 22:00:01.092][biodb::testContext]
biodb.INFO [2024-07-05 22:00:01.095][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:00:01.096][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-05 22:00:01.097][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:00:01.098][biodb::testContext]
biodb.INFO [2024-07-05 22:00:01.106][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:00:01.109][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-05 22:00:01.121][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:01.123][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-05 22:00:01.123][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-05 22:00:01.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.127][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-05 22:00:01.134][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-05 22:00:01.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.141][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-05 22:00:01.142][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-05 22:00:01.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.145][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-05 22:00:01.145][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-05 22:00:01.146][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-05 22:00:01.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.160][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-05 22:00:01.161][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-05 22:00:01.161][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-05 22:00:01.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.162][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-05 22:00:01.163][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-05 22:00:01.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.167][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-05 22:00:01.168][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-05 22:00:01.169][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-05 22:00:01.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.171][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-05 22:00:01.172][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-05 22:00:01.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.175][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-05 22:00:01.175][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-05 22:00:01.175][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-05 22:00:01.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.177][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:00:01.177][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-05 22:00:01.177][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-05 22:00:01.177][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-05 22:00:01.178][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-05 22:00:01.178][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-05 22:00:01.178][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.179][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-05 22:00:01.179][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-05 22:00:01.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.180][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-05 22:00:01.181][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-05 22:00:01.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.182][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-05 22:00:01.182][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-05 22:00:01.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.183][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-05 22:00:01.183][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-05 22:00:01.185][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.189][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-05 22:00:01.190][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-05 22:00:01.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.192][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:00:01.193][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-05 22:00:01.208][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-05 22:00:01.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.211][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-05 22:00:01.212][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-05 22:00:01.213][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-05 22:00:01.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.220][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-05 22:00:01.240][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.256][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-05 22:00:01.258][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.258][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:01.259][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.260][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.262][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.262][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.263][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:00:01.264][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:01.265][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.265][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-05 22:00:01.266][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:01.267][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.268][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.268][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:01.268][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:01.268][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:01.268][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:00:01.268][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:00:01.269][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:01.271][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.274][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.274][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:01.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.275][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.275][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.276][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.276][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:01.277][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:01.279][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.280][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.281][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-05 22:00:01.283][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.284][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:00:01.288][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.288][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:01.288][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.289][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.289][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.289][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.290][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:00:01.290][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:01.290][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.291][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-05 22:00:01.291][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:01.291][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.292][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.292][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:01.292][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:01.292][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:01.292][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:00:01.292][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:00:01.292][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:01.293][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.293][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:01.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.294][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.294][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.294][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.295][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:01.295][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:01.295][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.295][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.296][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-05 22:00:01.296][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.297][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-05 22:00:01.297][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.297][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:01.298][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.300][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.301][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.302][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.303][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:00:01.311][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:01.312][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.312][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-05 22:00:01.312][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:01.313][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.313][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.313][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.313][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:01.314][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.314][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.314][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:01.314][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.315][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.315][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.315][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.316][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:01.316][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:01.316][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.316][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.317][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-05 22:00:01.317][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.318][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:00:01.318][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.318][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:01.318][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.319][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.319][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.319][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.320][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:00:01.320][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:01.320][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.321][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-05 22:00:01.322][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:01.323][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.324][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.324][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.325][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:01.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.327][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:01.328][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.329][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.329][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.330][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.331][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:01.333][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:01.334][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.334][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:01.338][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:01.339][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.391][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.397][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-05 22:00:01.401][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-05 22:00:01.401][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-05 22:00:01.402][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-05 22:00:01.402][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:00:01.403][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-05 22:00:01.403][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-05 22:00:01.403][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-05 22:00:01.404][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-05 22:00:01.404][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-05 22:00:01.405][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:00:01.405][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-05 22:00:01.405][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-05 22:00:01.406][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-05 22:00:01.406][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-05 22:00:01.407][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-05 22:00:01.407][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-05 22:00:01.408][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-05 22:00:01.408][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:00:01.408][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-05 22:00:01.409][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-05 22:00:01.409][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-05 22:00:01.412][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-05 22:00:01.413][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-05 22:00:01.414][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-05 22:00:01.415][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-05 22:00:01.416][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-05 22:00:01.418][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-05 22:00:01.419][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-05 22:00:01.420][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-05 22:00:01.422][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-05 22:00:01.423][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-05 22:00:01.424][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-05 22:00:01.425][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-05 22:00:01.426][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-05 22:00:01.427][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-05 22:00:01.428][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-05 22:00:01.429][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-05 22:00:01.430][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-05 22:00:01.432][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-05 22:00:01.434][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-05 22:00:01.435][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-05 22:00:01.437][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-05 22:00:01.438][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-05 22:00:01.448][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-05 22:00:01.449][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-05 22:00:01.449][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-05 22:00:01.450][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-05 22:00:01.450][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-05 22:00:01.451][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-05 22:00:01.451][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-05 22:00:01.451][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-05 22:00:01.453][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-05 22:00:01.455][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-05 22:00:01.456][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-05 22:00:01.460][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-05 22:00:01.461][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-05 22:00:01.462][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-05 22:00:01.463][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-05 22:00:01.464][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-05 22:00:01.465][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-05 22:00:01.466][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-05 22:00:01.467][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-05 22:00:01.468][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-05 22:00:01.469][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-05 22:00:01.469][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-05 22:00:01.473][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:00:01.475][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:00:01.476][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-05 22:00:01.476][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-05 22:00:01.477][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-05 22:00:01.477][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-05 22:00:01.478][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-05 22:00:01.478][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-05 22:00:01.478][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-05 22:00:01.479][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-05 22:00:01.479][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-05 22:00:01.480][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-05 22:00:01.480][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-05 22:00:01.480][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-05 22:00:01.481][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-05 22:00:01.481][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-05 22:00:01.482][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-05 22:00:01.485][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-05 22:00:01.487][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:00:01.490][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:01.491][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.492][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.498][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.501][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.513][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.525][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.547][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.557][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:01.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:01.567][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-05 22:00:01.585][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-05 22:00:01.587][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.588][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.588][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.589][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:01.590][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.590][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.591][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.592][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-05 22:00:01.595][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-05 22:00:01.595][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:01.595][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-05 22:00:01.596][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-05 22:00:01.597][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:01.597][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:01.597][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:01.597][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:01.597][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-05 22:00:01.598][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.598][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.598][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:01.599][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:01.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:01.599][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:01.599][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:00:01.599][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-05 22:00:01.600][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:01.600][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:01.600][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:01.600][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-05 22:00:01.600][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-05 22:00:01.603][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:00:01.603][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:00:01.604][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-05 22:00:01.607][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:00:01.608][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:00:01.609][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:00:01.640][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-05 22:00:01.641][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-05 22:00:01.645][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-05 22:00:01.650][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-05 22:00:01.655][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:00:01.656][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:00:01.657][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-05 22:00:01.657][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-05 22:00:01.666][biodb::testThat]
biodb.INFO [2024-07-05 22:00:01.667][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-05 22:00:01.669][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:01.669][biodb::testThat]
biodb.TRACE[2024-07-05 22:00:01.671][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-07-05 22:00:01.672][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:01.674][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:01.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:01.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:01.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:01.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:01.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:01.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:01.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:01.698][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.699][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.700][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.711][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:01.711][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:01.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.712][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.731][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:01.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:01.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.735][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:01.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:01.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.737][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:01.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:01.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.757][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:01.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:01.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.760][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:01.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:01.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:01.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:01.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.770][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:01.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:01.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.779][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:01.780][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:01.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.782][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:01.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:01.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.786][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:01.787][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:01.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.789][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.790][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:01.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:01.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:01.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.796][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:01.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:01.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.803][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:01.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:01.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.805][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.806][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:01.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:01.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.810][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:01.814][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:01.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.815][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.816][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:01.817][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:01.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.817][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:01.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:01.870][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-07-05 22:00:01.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:01.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:01.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:01.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:01.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:01.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:01.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:01.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:01.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:01.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:01.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:01.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:01.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.946][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:00:01.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:00:01.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.947][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:00:01.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:00:01.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.948][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-05 22:00:01.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-05 22:00:01.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.949][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-05 22:00:01.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-05 22:00:01.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:01.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:01.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:01.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:01.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:01.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.008][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.009][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.037][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.052][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.053][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.053][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.054][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.062][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:02.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:02.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.065][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.068][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:02.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.072][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:02.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:02.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.073][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:02.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:02.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.081][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.082][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.082][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.090][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.090][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:02.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:02.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:02.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.099][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:02.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.100][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:02.107][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:02.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.108][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.108][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:02.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:02.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.112][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.114][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.115][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.116][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.121][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.121][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.128][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.129][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.130][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.140][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:02.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:02.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:02.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:02.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:02.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:02.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.148][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:02.148][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:02.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.150][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:02.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:02.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.158][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.158][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.158][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.159][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.169][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.170][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.179][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.179][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.180][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.182][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:02.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:02.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.186][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.190][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:02.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:02.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.193][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.193][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.195][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.198][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.198][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.200][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.201][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.204][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.205][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.205][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.207][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.208][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.209][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:02.210][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:02.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.210][ef$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:02.213][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.213][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-05 22:00:02.214][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:02.214][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:02.219][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-07-05 22:00:02.226][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:02.230][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-07-05 22:00:02.231][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:02.233][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-07-05 22:00:02.233][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:02.243][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:02.244][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:02.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:02.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:02.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:02.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:02.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:02.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:02.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:02.248][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.249][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.249][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.263][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:02.264][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:02.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.264][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:02.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:02.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.266][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:02.266][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:02.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.267][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.267][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:02.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:02.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.271][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.273][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.274][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.275][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.275][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.276][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:02.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.277][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:02.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.278][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:02.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.283][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.285][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.286][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.286][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.287][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:02.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.288][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:02.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:02.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.289][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:02.290][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:02.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:02.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:02.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:02.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:02.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:02.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:02.316][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-07-05 22:00:02.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-05 22:00:02.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-05 22:00:02.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-05 22:00:02.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-05 22:00:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.321][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-05 22:00:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-05 22:00:02.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:02.332][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.332][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-05 22:00:02.332][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:02.333][biodb::testThat]
biodb.TRACE[2024-07-05 22:00:02.334][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.335][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:02.335][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-07-05 22:00:02.348][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.351][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:02.353][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-07-05 22:00:02.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-05 22:00:02.363][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:02.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-05 22:00:02.368][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:02.369][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-05 22:00:02.377][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:02.378][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:02.379][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:00:02.379][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:02.381][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:00:02.381][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-07-05 22:00:02.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:02.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.390][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.391][ef$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:02.393][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.393][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-05 22:00:02.393][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:02.394][biodb::testThat]
biodb.TRACE[2024-07-05 22:00:02.403][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:02.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:02.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:02.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:02.428][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:02.428][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:00:02.428][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:02.429][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-07-05 22:00:02.440][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.440][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-05 22:00:02.440][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:02.441][biodb::testThat]
biodb.TRACE[2024-07-05 22:00:02.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.467][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:00:02.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:00:02.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.472][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:00:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:00:02.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.473][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-05 22:00:02.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-05 22:00:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.474][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-05 22:00:02.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-05 22:00:02.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:02.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:02.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:02.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.489][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:00:02.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:00:02.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-05 22:00:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-05 22:00:02.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.492][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-05 22:00:02.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-05 22:00:02.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-05 22:00:02.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-05 22:00:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:02.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:02.496][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.496][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-05 22:00:02.497][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:02.497][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.500][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.500][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-05 22:00:02.500][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:02.501][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.504][biodb::testThat]
biodb.INFO [2024-07-05 22:00:02.504][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-05 22:00:02.507][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:02.508][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:02.509][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-07-05 22:00:03.055][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-07-05 22:00:04.362][biodb::testThat]
biodb.INFO [2024-07-05 22:00:04.362][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-05 22:00:04.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:04.363][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:04.734][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-07-05 22:00:05.141][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.146][ef$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:05.147][biodb::testThat]
biodb.INFO [2024-07-05 22:00:05.159][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-07-05 22:00:05.160][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:05.160][biodb::testThat]
biodb.TRACE[2024-07-05 22:00:05.164][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.166][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.199][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:05.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:05.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:00:05.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.202][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:00:05.227][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:05.228][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:05.229][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:00:05.229][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.230][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-07-05 22:00:05.235][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-05 22:00:05.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-05 22:00:05.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.243][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.247][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:05.248][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:05.248][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-05 22:00:05.248][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.249][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-05 22:00:05.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.256][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-07-05 22:00:05.272][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.273][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-07-05 22:00:05.274][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.274][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-07-05 22:00:05.275][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.275][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.276][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.280][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.281][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.283][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.283][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.284][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.285][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.286][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.290][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.291][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.292][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.294][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.294][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.295][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.296][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.297][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.297][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.298][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.298][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.300][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.301][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.302][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.303][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.308][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.309][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.309][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.311][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.311][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.311][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.324][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-07-05 22:00:05.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.333][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:05.334][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:05.335][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-05 22:00:05.335][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.336][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-05 22:00:05.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.354][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-07-05 22:00:05.354][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.355][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-07-05 22:00:05.355][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.356][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-07-05 22:00:05.356][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.356][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.357][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.362][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.363][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.364][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.365][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.366][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.370][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.371][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.371][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.374][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.375][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.379][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.381][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.382][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.382][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.383][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.385][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.387][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.387][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.387][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.389][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.389][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.391][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.391][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.392][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.407][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-07-05 22:00:05.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:05.423][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:05.424][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:00:05.424][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.425][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:00:05.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.426][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.431][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.435][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.436][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-07-05 22:00:05.436][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-07-05 22:00:05.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.439][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-07-05 22:00:05.440][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.440][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.440][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.445][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.445][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.446][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.447][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.448][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.448][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.449][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.449][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.450][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.451][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.454][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.455][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.456][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.456][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.456][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.457][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.457][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.458][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.458][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.458][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.459][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.459][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.459][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.461][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.461][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.462][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.462][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.465][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.466][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.466][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.478][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-07-05 22:00:05.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.487][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-07-05 22:00:05.488][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.491][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-07-05 22:00:05.492][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.493][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-07-05 22:00:05.493][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.494][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.494][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.495][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.499][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.499][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.500][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.501][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.502][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.502][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.503][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.504][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.504][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.505][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.506][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.506][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.506][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.507][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.507][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.507][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.508][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.508][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.509][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.510][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.510][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.511][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.512][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.512][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.512][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.514][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.514][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.521][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.536][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-07-05 22:00:05.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.542][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.545][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-07-05 22:00:05.545][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.546][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-07-05 22:00:05.546][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.548][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-07-05 22:00:05.548][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.548][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.549][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.554][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.555][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.556][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.557][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.557][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.557][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.558][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.558][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.559][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.559][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.560][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.561][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.561][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.562][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.562][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.563][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.564][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.564][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.564][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.565][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.567][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.567][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.577][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.577][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.589][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-07-05 22:00:05.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.598][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-07-05 22:00:05.599][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.599][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-07-05 22:00:05.601][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.602][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-07-05 22:00:05.603][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.603][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.603][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.608][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.609][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.610][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.611][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.611][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.612][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.616][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.617][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.621][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.621][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.625][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.625][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.625][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.626][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.627][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.628][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.628][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.631][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.632][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.634][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.634][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.634][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.635][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.636][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.637][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.665][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-07-05 22:00:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.673][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-07-05 22:00:05.673][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-07-05 22:00:05.674][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.676][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-07-05 22:00:05.676][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.676][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.677][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.681][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.682][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.684][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.684][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.684][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.685][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.686][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.686][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.687][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.689][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.690][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.691][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.691][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.691][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.693][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.693][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.694][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.695][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.699][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.700][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.701][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.702][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.707][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.708][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.708][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.719][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.720][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.721][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.722][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.725][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.726][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.730][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.735][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.750][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-07-05 22:00:05.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.760][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.760][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-07-05 22:00:05.760][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-07-05 22:00:05.762][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.762][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-07-05 22:00:05.763][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.763][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.764][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.768][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.772][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.774][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.774][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.776][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.777][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.779][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.779][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.779][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.781][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.781][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.782][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.784][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.784][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.784][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.785][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.786][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.786][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.788][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.789][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.790][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.792][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.792][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.794][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.795][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.795][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.816][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-07-05 22:00:05.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.825][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-07-05 22:00:05.825][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-07-05 22:00:05.826][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.827][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-07-05 22:00:05.827][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.828][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.828][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.831][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.832][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.833][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.833][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.835][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.835][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.836][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.836][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.843][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.843][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.844][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.845][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.846][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.846][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.848][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.850][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.850][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.851][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.852][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.858][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.862][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.864][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.864][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.866][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.867][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.868][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.868][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.869][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.882][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-07-05 22:00:05.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.892][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-07-05 22:00:05.892][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.893][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-07-05 22:00:05.893][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.894][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-07-05 22:00:05.894][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.895][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.895][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.903][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.904][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.906][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.907][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.909][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.909][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.909][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.911][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.911][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.913][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.913][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.914][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.915][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.916][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.916][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.917][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.917][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.919][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.919][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.921][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.921][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.923][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.923][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.924][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.925][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.928][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.930][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.944][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-07-05 22:00:05.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:05.952][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-07-05 22:00:05.952][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:05.953][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-07-05 22:00:05.954][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:05.954][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-07-05 22:00:05.955][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:05.955][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:05.955][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:05.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:05.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:05.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:05.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:05.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:05.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:05.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:05.960][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.960][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.961][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.962][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.962][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.963][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:05.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.964][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:05.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.966][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.967][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.967][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:05.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:05.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.969][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.969][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.969][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.971][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.971][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:05.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.972][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.972][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.973][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:05.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:05.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.977][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.977][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.978][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:05.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.979][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.980][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.980][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:05.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:05.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.982][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.982][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.983][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:05.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.984][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.984][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.987][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:05.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:05.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.992][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:05.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:05.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:05.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:05.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:05.999][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-07-05 22:00:06.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.006][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.006][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-07-05 22:00:06.007][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.010][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-07-05 22:00:06.011][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.012][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-07-05 22:00:06.012][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.012][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.013][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.020][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.021][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.024][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.024][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.025][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.026][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.027][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.029][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.030][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.030][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.031][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.031][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.037][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.037][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.037][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.038][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.038][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.039][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.039][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.040][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.041][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.042][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.047][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.048][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.049][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.050][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.050][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.056][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.057][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.057][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.075][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-07-05 22:00:06.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.086][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-07-05 22:00:06.086][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-07-05 22:00:06.094][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.094][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-07-05 22:00:06.095][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.095][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.095][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.100][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.100][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.101][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.102][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.103][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.103][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.109][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.109][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.110][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.112][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.113][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.113][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.114][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.115][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.115][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.116][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.116][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.124][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.125][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.127][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.127][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.127][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.129][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.129][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.130][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.143][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-07-05 22:00:06.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.151][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-07-05 22:00:06.151][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.151][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-07-05 22:00:06.152][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.152][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-07-05 22:00:06.153][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.153][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.154][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.157][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.162][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.164][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.173][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.173][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.174][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.174][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.176][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.176][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.178][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.179][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.179][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.180][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.180][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.180][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.183][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.183][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.184][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.185][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.186][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.187][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.188][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.190][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.190][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.190][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.191][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.192][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.193][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.212][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-07-05 22:00:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.214][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.220][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-07-05 22:00:06.220][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.221][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-07-05 22:00:06.221][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.222][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-07-05 22:00:06.222][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.223][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.223][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.224][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.227][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.228][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.228][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.230][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.230][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.231][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.245][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.246][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.248][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.251][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.255][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.255][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.255][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.264][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.266][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.267][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.273][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.277][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.278][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.279][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.280][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.280][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.281][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.282][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.282][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.284][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.299][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.302][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-07-05 22:00:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.307][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.327][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-07-05 22:00:06.327][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.328][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-07-05 22:00:06.328][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.329][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-07-05 22:00:06.329][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.330][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.330][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.334][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.338][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.344][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.344][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.345][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.346][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.346][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.347][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.349][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.351][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.351][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.353][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.353][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.354][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.354][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.355][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.355][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.357][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.357][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.359][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.359][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.360][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.361][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.361][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.362][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.362][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.363][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.364][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.382][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-07-05 22:00:06.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.386][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.389][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-07-05 22:00:06.390][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.390][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-07-05 22:00:06.391][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.392][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-07-05 22:00:06.392][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.393][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.393][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.394][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.398][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.398][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.400][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.401][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.405][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.405][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.407][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.408][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.411][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.412][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.413][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.418][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.419][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.421][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.421][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.422][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.422][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.423][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.428][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.433][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.434][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.436][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.437][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.448][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.449][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.449][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.451][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.452][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.474][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-07-05 22:00:06.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.482][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-07-05 22:00:06.482][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-07-05 22:00:06.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.485][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-07-05 22:00:06.485][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.485][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.486][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.494][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.494][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.503][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.504][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.519][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.520][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.522][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.523][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.525][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.525][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.525][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.528][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.528][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.531][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.532][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.533][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.535][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.535][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.537][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.537][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.539][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.540][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.540][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.542][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.542][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.560][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-07-05 22:00:06.560][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.577][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-07-05 22:00:06.578][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.578][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-07-05 22:00:06.579][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.580][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-07-05 22:00:06.580][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.581][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.581][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.585][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.586][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.588][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.588][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.588][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.589][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.592][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.593][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.594][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.594][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.595][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.597][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.599][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.608][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.609][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.613][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.613][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.614][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.615][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.616][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.618][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.620][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.621][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.621][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.623][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.624][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.626][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.627][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.647][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-07-05 22:00:06.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.657][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-07-05 22:00:06.658][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.658][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-07-05 22:00:06.666][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.667][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-07-05 22:00:06.668][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.668][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.669][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.673][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.674][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.676][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.676][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.677][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.678][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.680][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.681][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.681][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.685][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.686][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.686][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.686][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.687][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.687][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.689][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.691][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.692][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.694][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.696][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.696][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.725][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-07-05 22:00:06.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:06.740][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-07-05 22:00:06.741][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:06.741][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-07-05 22:00:06.742][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.743][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-07-05 22:00:06.744][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:06.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:06.744][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:06.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.749][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.750][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.751][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.752][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.752][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.752][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:06.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:06.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.754][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.754][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:06.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:06.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.756][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.756][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.757][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:06.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:06.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.758][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.761][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.762][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:06.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.764][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.765][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:06.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.765][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.765][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.766][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.766][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:06.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.768][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.769][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:06.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.770][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.771][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.771][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:06.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.772][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.773][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.773][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:06.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:06.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.775][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:06.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:06.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.778][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:06.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:06.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.788][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-07-05 22:00:06.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.810][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:06.811][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:06.811][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:00:06.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:06.813][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:00:06.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.818][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.859][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.893][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.928][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.931][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.933][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.945][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.969][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:06.993][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:06.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:06.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:06.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:06.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:06.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:06.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:06.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:06.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:06.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:06.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.012][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.045][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:07.046][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:07.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-07-05 22:00:07.051][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.052][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-07-05 22:00:07.053][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:07.055][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:07.055][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-07-05 22:00:07.055][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.056][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-07-05 22:00:07.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:07.061][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-07-05 22:00:07.061][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:07.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-07-05 22:00:07.062][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.063][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-07-05 22:00:07.063][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:07.064][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:07.064][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:07.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.069][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.070][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.070][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.072][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:07.072][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:07.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.072][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:07.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.076][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:07.076][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:07.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.077][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:07.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:07.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.078][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:07.079][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:07.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.079][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.081][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:07.081][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:07.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.081][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:07.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:07.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.083][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:07.083][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:07.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.084][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.084][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:07.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.085][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:07.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.086][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:07.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.088][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.088][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.090][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:07.103][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:07.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.104][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:07.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.106][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:07.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:07.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.107][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.108][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:07.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:07.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.109][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:07.109][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:07.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.109][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:07.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.130][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-07-05 22:00:07.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.150][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:07.151][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-07-05 22:00:07.151][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:07.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-07-05 22:00:07.155][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.156][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-07-05 22:00:07.156][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:07.157][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:07.157][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:07.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.161][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.164][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:07.164][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:07.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:07.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.166][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:07.166][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:07.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.167][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:07.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:07.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:07.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:07.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.169][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:07.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:07.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:07.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.171][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:07.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:07.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.173][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:07.173][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:07.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.173][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.174][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:07.174][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.174][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.175][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:07.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.176][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.177][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.178][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:07.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:07.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.179][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:07.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.181][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:07.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:07.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.181][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:07.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.183][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:07.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:07.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.183][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:07.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:07.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.199][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-07-05 22:00:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.216][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:07.218][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:07.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:00:07.219][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.219][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:00:07.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.299][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.303][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.367][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.374][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.385][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.393][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.400][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.420][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:07.421][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:07.421][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-05 22:00:07.422][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.422][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-05 22:00:07.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.441][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.513][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.517][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.518][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.541][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.554][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.620][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-05 22:00:07.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-05 22:00:07.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:07.624][biodb::testThat]
biodb.INFO [2024-07-05 22:00:07.624][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-07-05 22:00:07.625][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:07.625][biodb::testThat]
biodb.TRACE[2024-07-05 22:00:07.626][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-05 22:00:07.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-05 22:00:07.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.637][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.637][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:07.639][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:07.640][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:07.649][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-05 22:00:07.650][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.651][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-05 22:00:07.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.661][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:07.663][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:07.663][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-05 22:00:07.663][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.664][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-05 22:00:07.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.667][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:07.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.678][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:00:07.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.684][private$selectFields]
biodb.TRACE[2024-07-05 22:00:07.685][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:07.685][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:07.685][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.686][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.818][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.818][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.819][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.820][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:07.820][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.827][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-05 22:00:07.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.830][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.834][private$selectFields]
biodb.TRACE[2024-07-05 22:00:07.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:07.835][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:07.835][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.835][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.836][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.836][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.836][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.837][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.840][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.840][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.841][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.841][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.841][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.842][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.842][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.846][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:00:07.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.854][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.854][private$selectFields]
biodb.TRACE[2024-07-05 22:00:07.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:07.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:07.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.855][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.857][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.858][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.858][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.859][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:07.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.867][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-05 22:00:07.868][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:00:07.869][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:00:07.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.914][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:07.918][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:07.919][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:07.919][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-05 22:00:07.920][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.921][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-05 22:00:07.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:07.923][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:07.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-05 22:00:07.924][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:07.925][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-05 22:00:07.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.929][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.933][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.934][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:07.962][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:00:07.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:07.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:07.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:07.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:07.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:07.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.988][private$selectFields]
biodb.TRACE[2024-07-05 22:00:07.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:07.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:07.989][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.989][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.990][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.991][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.991][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:07.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.992][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.992][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.993][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.996][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:07.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:07.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:07.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-05 22:00:07.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:07.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:07.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.017][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.017][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.018][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.019][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.024][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.026][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.026][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.030][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:00:08.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.031][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.034][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.036][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.037][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.037][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.037][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.038][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.043][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.044][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.045][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.045][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.046][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-05 22:00:08.050][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:00:08.050][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:00:08.056][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-05 22:00:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-05 22:00:08.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:08.058][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.059][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-07-05 22:00:08.059][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:08.059][biodb::testThat]
biodb.TRACE[2024-07-05 22:00:08.060][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-05 22:00:08.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-05 22:00:08.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.077][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-05 22:00:08.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.078][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-05 22:00:08.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.098][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.100][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.100][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-05 22:00:08.101][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.101][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-05 22:00:08.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.128][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:00:08.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.134][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.134][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.144][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.144][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.145][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.145][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.146][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.146][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.146][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.147][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.147][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.147][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.148][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.152][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-05 22:00:08.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.162][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.162][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.164][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.165][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.166][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.166][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.167][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.167][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:00:08.178][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.183][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.184][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.184][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.184][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.185][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.185][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.186][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.186][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.186][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.187][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.187][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.188][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.188][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.192][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-05 22:00:08.192][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:00:08.193][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:00:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.207][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.208][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-05 22:00:08.209][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.209][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-05 22:00:08.210][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.212][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.212][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-05 22:00:08.212][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.213][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-05 22:00:08.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.244][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:00:08.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.245][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.257][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.257][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.257][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.258][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.259][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.260][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.261][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.261][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-05 22:00:08.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.271][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.271][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.272][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.272][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.273][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.275][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.275][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.276][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.276][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.280][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:00:08.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.291][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.292][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.292][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.293][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.294][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.294][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.295][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.295][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.295][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.296][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.301][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-05 22:00:08.301][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:00:08.302][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:00:08.305][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-05 22:00:08.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-05 22:00:08.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:08.307][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.307][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-07-05 22:00:08.308][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:08.308][biodb::testThat]
biodb.TRACE[2024-07-05 22:00:08.309][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-05 22:00:08.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-05 22:00:08.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.327][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.329][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.329][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-05 22:00:08.329][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.330][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-05 22:00:08.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.334][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.338][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.339][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.339][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-05 22:00:08.339][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.340][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-05 22:00:08.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.343][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.358][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:00:08.358][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.359][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.361][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.364][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.364][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.364][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.365][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.366][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.366][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.367][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.367][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.367][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.368][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.368][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.368][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.369][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.369][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-05 22:00:08.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.379][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.387][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.388][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.388][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.389][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.400][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.401][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.402][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.402][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.403][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.403][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.404][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.404][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:00:08.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.414][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.415][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.415][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.416][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.416][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.417][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.417][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.418][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.418][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.418][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.418][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.419][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.419][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.424][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-05 22:00:08.424][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:00:08.424][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:00:08.440][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.451][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.452][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.452][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-05 22:00:08.453][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.454][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-05 22:00:08.455][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.456][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.457][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-05 22:00:08.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.457][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-05 22:00:08.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.461][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.489][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-05 22:00:08.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.497][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.498][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.498][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.501][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.501][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.502][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.502][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.503][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.503][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.507][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-05 22:00:08.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.513][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.513][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.513][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.514][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.514][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.515][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.516][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.517][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.517][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.518][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.521][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.521][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.523][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.527][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-05 22:00:08.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.534][private$selectFields]
biodb.TRACE[2024-07-05 22:00:08.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-05 22:00:08.534][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-05 22:00:08.534][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.536][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.537][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.538][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-05 22:00:08.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.539][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-05 22:00:08.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.543][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-05 22:00:08.543][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-05 22:00:08.543][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-05 22:00:08.550][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-05 22:00:08.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-05 22:00:08.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:08.553][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.553][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-07-05 22:00:08.554][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:08.554][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:08.554][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-05 22:00:08.555][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:08.555][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-05 22:00:08.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.562][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2024-07-05 22:00:08.563][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:08.563][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:08.563][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:08.564][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.569][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.570][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:08.570][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:08.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.571][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.571][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:08.572][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:08.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.575][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.576][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:08.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:08.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.576][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.577][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.578][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.578][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.579][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.579][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:08.580][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.580][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.581][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.582][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:08.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:08.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.582][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.583][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:08.583][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:08.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.584][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:08.584][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:08.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.585][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.603][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.605][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-07-05 22:00:08.605][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-05 22:00:08.609][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.609][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-05 22:00:08.609][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:08.610][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:08.613][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-07-05 22:00:08.614][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-07-05 22:00:08.614][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-05 22:00:08.614][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-07-05 22:00:08.615][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-07-05 22:00:08.616][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-07-05 22:00:08.617][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:08.617][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-07-05 22:00:08.617][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:08.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.620][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.625][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:08.625][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:08.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.626][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.636][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:08.636][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:08.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.637][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:08.637][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:08.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.639][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.641][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:08.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.641][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.642][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.642][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.643][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:08.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:08.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.644][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.644][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:08.644][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:08.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.645][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.645][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:08.645][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:08.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.646][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.667][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.669][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:08.670][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:08.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.670][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.671][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:08.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:08.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.676][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:08.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:08.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.677][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:08.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:08.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:08.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:08.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:08.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.680][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.681][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.681][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.682][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.683][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.684][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.685][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:08.685][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.687][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.687][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:08.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.688][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.689][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.691][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:08.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:08.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.692][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:08.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:08.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:08.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:08.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.694][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:08.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:08.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.695][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:08.696][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:08.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.696][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:08.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:08.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:08.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:08.711][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.712][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.713][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:08.714][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:08.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.714][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.715][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:08.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:08.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.716][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:08.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:08.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:08.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:08.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.718][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:08.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:08.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.719][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:08.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:08.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.721][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.722][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:08.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.723][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.723][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.724][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:08.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.725][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:08.726][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.726][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:08.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.728][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.732][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:08.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:08.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.733][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.734][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:08.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.735][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:08.735][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:08.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.736][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:08.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:08.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:08.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:08.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.738][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:08.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:08.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:08.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:08.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:08.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:08.761][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-07-05 22:00:08.762][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-05 22:00:08.762][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-07-05 22:00:08.766][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.767][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-07-05 22:00:08.767][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:08.767][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.775][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.776][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-07-05 22:00:08.776][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:08.776][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.782][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.782][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-07-05 22:00:08.782][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:08.783][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:08.783][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:08.785][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:08.785][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2024-07-05 22:00:08.785][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:08.786][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2024-07-05 22:00:08.790][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:08.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:08.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.791][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:08.791][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.791][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:08.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:08.792][ef$get] fields variable is a list.
biodb.INFO [2024-07-05 22:00:08.792][biodb::testThat]
biodb.INFO [2024-07-05 22:00:08.793][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-07-05 22:00:08.793][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:08.793][biodb::testThat]
biodb.ERROR[2024-07-05 22:00:08.801][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-07-05 22:00:08.807][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-07-05 22:00:08.811][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-05 22:00:08.812][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-05 22:00:08.812][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-05 22:00:08.812][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-05 22:00:08.813][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.813][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.814][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:00:08.817][biodb::testContext]
biodb.INFO [2024-07-05 22:00:08.818][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:00:08.818][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-07-05 22:00:08.818][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:00:08.819][biodb::testContext]
biodb.INFO [2024-07-05 22:00:08.821][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:00:08.822][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-05 22:00:08.824][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:08.824][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-05 22:00:08.824][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-05 22:00:08.825][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.825][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-05 22:00:08.826][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-05 22:00:08.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.827][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-05 22:00:08.827][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-05 22:00:08.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.828][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-05 22:00:08.828][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-05 22:00:08.828][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-05 22:00:08.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.829][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-05 22:00:08.830][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-05 22:00:08.830][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-05 22:00:08.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.831][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-05 22:00:08.832][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-05 22:00:08.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.833][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-05 22:00:08.833][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-05 22:00:08.833][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-05 22:00:08.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.834][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-05 22:00:08.835][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-05 22:00:08.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.836][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-05 22:00:08.836][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-05 22:00:08.836][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-05 22:00:08.836][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.837][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:00:08.837][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-05 22:00:08.838][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-05 22:00:08.838][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-05 22:00:08.838][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-05 22:00:08.839][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-05 22:00:08.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.839][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-05 22:00:08.840][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-05 22:00:08.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.841][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-05 22:00:08.841][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-05 22:00:08.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.842][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-05 22:00:08.842][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-05 22:00:08.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.843][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-05 22:00:08.844][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-05 22:00:08.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.844][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-05 22:00:08.845][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-05 22:00:08.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.846][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:00:08.846][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-05 22:00:08.858][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-05 22:00:08.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.859][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-05 22:00:08.860][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-05 22:00:08.860][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-05 22:00:08.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.861][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-05 22:00:08.862][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.862][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-05 22:00:08.862][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.862][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:08.863][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.863][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.863][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.863][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.864][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:00:08.864][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:08.864][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.865][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-05 22:00:08.865][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:08.865][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.865][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.866][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:08.866][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:08.866][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:08.866][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:00:08.866][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:00:08.866][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:08.866][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:08.866][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:08.867][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:08.867][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:08.867][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:08.867][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.868][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.868][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:08.868][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:08.868][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.869][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.869][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-05 22:00:08.870][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.870][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:00:08.870][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.870][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:08.871][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.871][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.871][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.871][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.872][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:00:08.872][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:08.872][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.873][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-05 22:00:08.873][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:08.873][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.873][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.874][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:08.874][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:08.874][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:08.874][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:00:08.874][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:00:08.874][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:08.874][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:08.874][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:08.875][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:08.875][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:08.875][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:08.875][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.876][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.876][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:08.876][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:08.876][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.877][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.877][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-05 22:00:08.877][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.878][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-05 22:00:08.878][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.878][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:08.879][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.879][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.879][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.879][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.880][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:00:08.880][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:08.880][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.880][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-05 22:00:08.881][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:08.881][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.881][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.881][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.882][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:08.882][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:08.882][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:08.882][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:08.883][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:08.883][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:08.883][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.883][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.884][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:08.884][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:08.884][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.884][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.885][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-05 22:00:08.885][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.885][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:00:08.886][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.886][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:08.886][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.886][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.887][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.887][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.887][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:00:08.887][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:08.888][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.888][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-05 22:00:08.888][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:08.888][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.889][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.889][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.889][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:08.889][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:08.890][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:08.890][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:08.890][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:08.890][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:08.891][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.891][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.891][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:08.891][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:08.892][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.892][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:08.892][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:08.892][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.909][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.913][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.918][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-05 22:00:08.918][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-05 22:00:08.919][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-05 22:00:08.919][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-05 22:00:08.919][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:00:08.920][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-05 22:00:08.920][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-05 22:00:08.921][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-05 22:00:08.921][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-05 22:00:08.921][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-05 22:00:08.922][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:00:08.922][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-05 22:00:08.923][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-05 22:00:08.923][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-05 22:00:08.923][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-05 22:00:08.924][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-05 22:00:08.924][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-05 22:00:08.925][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-05 22:00:08.925][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:00:08.925][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-05 22:00:08.926][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-05 22:00:08.926][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-05 22:00:08.926][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-05 22:00:08.927][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-05 22:00:08.927][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-05 22:00:08.928][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-05 22:00:08.928][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-05 22:00:08.928][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-05 22:00:08.929][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-05 22:00:08.929][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-05 22:00:08.930][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-05 22:00:08.930][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-05 22:00:08.931][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-05 22:00:08.931][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-05 22:00:08.931][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-05 22:00:08.932][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-05 22:00:08.932][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-05 22:00:08.933][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-05 22:00:08.933][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-05 22:00:08.933][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-05 22:00:08.934][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-05 22:00:08.934][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-05 22:00:08.935][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-05 22:00:08.935][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-05 22:00:08.935][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-05 22:00:08.936][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-05 22:00:08.936][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-05 22:00:08.937][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-05 22:00:08.937][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-05 22:00:08.937][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-05 22:00:08.938][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-05 22:00:08.938][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-05 22:00:08.938][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-05 22:00:08.939][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-05 22:00:08.939][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-05 22:00:08.940][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-05 22:00:08.940][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-05 22:00:08.940][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-05 22:00:08.941][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-05 22:00:08.941][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-05 22:00:08.942][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-05 22:00:08.942][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-05 22:00:08.942][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-05 22:00:08.943][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-05 22:00:08.943][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-05 22:00:08.943][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-05 22:00:08.944][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:00:08.944][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:00:08.945][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-05 22:00:08.945][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-05 22:00:08.945][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-05 22:00:08.946][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-05 22:00:08.946][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-05 22:00:08.947][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-05 22:00:08.947][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-05 22:00:08.947][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-05 22:00:08.948][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-05 22:00:08.948][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-05 22:00:08.948][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-05 22:00:08.949][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-05 22:00:08.949][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-05 22:00:08.950][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-05 22:00:08.950][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-05 22:00:08.952][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-05 22:00:08.953][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:00:08.953][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:08.953][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.954][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.956][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.971][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.982][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.987][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.989][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:08.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:08.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:08.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:08.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:08.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:08.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:08.991][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-05 22:00:08.992][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-05 22:00:08.992][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.993][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.993][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.993][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:08.993][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.994][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:08.994][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.994][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-05 22:00:08.995][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-05 22:00:08.995][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:08.995][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:08.995][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-05 22:00:08.996][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:08.999][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:08.999][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:08.999][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:09.000][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-05 22:00:09.000][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.000][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.000][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.001][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.001][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.001][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.001][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:00:09.001][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-05 22:00:09.002][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.002][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.002][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.002][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-05 22:00:09.002][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-05 22:00:09.003][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:00:09.003][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:00:09.004][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-05 22:00:09.004][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:00:09.005][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:00:09.005][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:00:09.006][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-05 22:00:09.006][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-05 22:00:09.007][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-05 22:00:09.007][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-05 22:00:09.008][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:00:09.008][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:00:09.008][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-05 22:00:09.008][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-05 22:00:09.009][biodb::testThat]
biodb.INFO [2024-07-05 22:00:09.009][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-07-05 22:00:09.009][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:09.010][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:09.011][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-05 22:00:09.012][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.013][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-05 22:00:09.013][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.014][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-05 22:00:09.015][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.016][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.017][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-05 22:00:09.017][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.017][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-05 22:00:09.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.022][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.023][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-05 22:00:09.024][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.025][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-05 22:00:09.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.045][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.047][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-05 22:00:09.047][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.048][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-05 22:00:09.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.055][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-05 22:00:09.057][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.057][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-05 22:00:09.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.067][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.068][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.069][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-05 22:00:09.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.070][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-05 22:00:09.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.076][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-05 22:00:09.077][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.077][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-05 22:00:09.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.082][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.083][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.084][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-07-05 22:00:09.084][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.085][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-07-05 22:00:09.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:00:09.091][biodb::testThat]
biodb.INFO [2024-07-05 22:00:09.091][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-07-05 22:00:09.091][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:09.092][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:09.093][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.094][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.094][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2024-07-05 22:00:09.095][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.095][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2024-07-05 22:00:09.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.100][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.102][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.102][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2024-07-05 22:00:09.102][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.103][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2024-07-05 22:00:09.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:00:09.109][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-05 22:00:09.109][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-05 22:00:09.110][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-05 22:00:09.110][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-05 22:00:09.110][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.111][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.111][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:00:09.115][biodb::testContext]
biodb.INFO [2024-07-05 22:00:09.116][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:00:09.116][biodb::testContext] Test context - Test web services
biodb.INFO [2024-07-05 22:00:09.116][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:00:09.116][biodb::testContext]
biodb.INFO [2024-07-05 22:00:09.117][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:00:09.118][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-05 22:00:09.119][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:09.120][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-05 22:00:09.120][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.120][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.121][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-05 22:00:09.121][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.122][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-05 22:00:09.123][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.123][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.124][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-05 22:00:09.124][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-05 22:00:09.124][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-05 22:00:09.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.125][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-05 22:00:09.126][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-05 22:00:09.126][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.127][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-05 22:00:09.127][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-05 22:00:09.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.128][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-05 22:00:09.128][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-05 22:00:09.129][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-05 22:00:09.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.133][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-05 22:00:09.133][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.134][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-05 22:00:09.135][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-05 22:00:09.135][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.142][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:00:09.142][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-05 22:00:09.143][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-05 22:00:09.143][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-05 22:00:09.143][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-05 22:00:09.143][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-05 22:00:09.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.144][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-05 22:00:09.145][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-05 22:00:09.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.146][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-05 22:00:09.146][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-05 22:00:09.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.147][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-05 22:00:09.147][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-05 22:00:09.148][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.148][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-05 22:00:09.149][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-05 22:00:09.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.150][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-05 22:00:09.150][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-05 22:00:09.150][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.151][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:00:09.151][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-05 22:00:09.163][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-05 22:00:09.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.165][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-05 22:00:09.165][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-05 22:00:09.165][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-05 22:00:09.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.166][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-05 22:00:09.167][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.167][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-05 22:00:09.167][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.168][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.168][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.168][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.168][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.169][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.169][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:00:09.169][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.169][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.170][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-05 22:00:09.170][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.170][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.170][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.171][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:09.171][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:09.171][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:09.171][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:00:09.171][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:00:09.171][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:09.171][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.171][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.172][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.172][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.172][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.172][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.173][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.173][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.175][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.176][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.176][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.176][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-05 22:00:09.177][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.177][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:00:09.177][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.178][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.178][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.178][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.179][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.179][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.179][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:00:09.179][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.180][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.180][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-05 22:00:09.180][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.180][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.181][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.181][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:09.181][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:09.181][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:09.181][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:00:09.181][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:00:09.181][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:09.181][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.182][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.182][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.182][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.182][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.183][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.183][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.183][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.183][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.184][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.184][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.184][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-05 22:00:09.185][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.186][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-05 22:00:09.186][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.187][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.187][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.187][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.187][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.188][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.188][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:00:09.188][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.189][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.189][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-05 22:00:09.189][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.189][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.190][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.190][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.190][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:09.191][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.191][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.191][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.191][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.192][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.192][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.192][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.192][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.193][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.193][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.193][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.193][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-05 22:00:09.194][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.194][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:00:09.194][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.195][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.195][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.195][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.196][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.196][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.196][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:00:09.196][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.197][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.197][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-05 22:00:09.197][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.197][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.198][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.198][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.198][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:09.198][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.199][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.199][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.199][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.200][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.200][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.200][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.200][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.201][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.201][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.201][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:09.201][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.213][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.217][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.225][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.226][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.229][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.229][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-05 22:00:09.230][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-05 22:00:09.230][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-05 22:00:09.231][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-05 22:00:09.231][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:00:09.231][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-05 22:00:09.232][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-05 22:00:09.232][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-05 22:00:09.232][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-05 22:00:09.239][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-05 22:00:09.239][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:00:09.240][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-05 22:00:09.240][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-05 22:00:09.240][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-05 22:00:09.241][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-05 22:00:09.241][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-05 22:00:09.242][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-05 22:00:09.242][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-05 22:00:09.242][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:00:09.243][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-05 22:00:09.243][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-05 22:00:09.244][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-05 22:00:09.244][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-05 22:00:09.244][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-05 22:00:09.245][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-05 22:00:09.245][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-05 22:00:09.245][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-05 22:00:09.246][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-05 22:00:09.246][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-05 22:00:09.247][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-05 22:00:09.247][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-05 22:00:09.247][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-05 22:00:09.248][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-05 22:00:09.248][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-05 22:00:09.248][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-05 22:00:09.249][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-05 22:00:09.249][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-05 22:00:09.250][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-05 22:00:09.250][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-05 22:00:09.250][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-05 22:00:09.251][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-05 22:00:09.251][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-05 22:00:09.251][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-05 22:00:09.252][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-05 22:00:09.252][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-05 22:00:09.253][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-05 22:00:09.253][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-05 22:00:09.253][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-05 22:00:09.254][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-05 22:00:09.254][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-05 22:00:09.257][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-05 22:00:09.257][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-05 22:00:09.258][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-05 22:00:09.258][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-05 22:00:09.263][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-05 22:00:09.263][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-05 22:00:09.264][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-05 22:00:09.264][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-05 22:00:09.265][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-05 22:00:09.265][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-05 22:00:09.265][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-05 22:00:09.266][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-05 22:00:09.266][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-05 22:00:09.266][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-05 22:00:09.267][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-05 22:00:09.267][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-05 22:00:09.268][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:00:09.268][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:00:09.268][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-05 22:00:09.269][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-05 22:00:09.269][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-05 22:00:09.270][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-05 22:00:09.270][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-05 22:00:09.270][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-05 22:00:09.271][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-05 22:00:09.271][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-05 22:00:09.271][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-05 22:00:09.272][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-05 22:00:09.272][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-05 22:00:09.272][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-05 22:00:09.273][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-05 22:00:09.273][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-05 22:00:09.274][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-05 22:00:09.274][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-05 22:00:09.275][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:00:09.275][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:09.275][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.276][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.287][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.289][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.295][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.298][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.305][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-05 22:00:09.306][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-05 22:00:09.306][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.306][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.307][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.307][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.307][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.308][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.308][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.308][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-05 22:00:09.308][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-05 22:00:09.309][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.309][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.309][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-05 22:00:09.309][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:09.310][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:09.311][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-05 22:00:09.311][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.311][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.311][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.312][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.312][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.312][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.312][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:00:09.312][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-05 22:00:09.313][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.313][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.313][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.316][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-05 22:00:09.316][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-05 22:00:09.317][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:00:09.317][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:00:09.318][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-05 22:00:09.318][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:00:09.319][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:00:09.319][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:00:09.320][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-05 22:00:09.321][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-05 22:00:09.321][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-05 22:00:09.321][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-05 22:00:09.322][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:00:09.322][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:00:09.322][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-05 22:00:09.323][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-05 22:00:09.323][biodb::testThat]
biodb.INFO [2024-07-05 22:00:09.323][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-07-05 22:00:09.324][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:09.324][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:09.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-05 22:00:09.329][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.329][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-05 22:00:09.330][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.330][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-05 22:00:09.331][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.333][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.334][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-05 22:00:09.334][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.335][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2024-07-05 22:00:09.338][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-05 22:00:09.338][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-05 22:00:09.339][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-05 22:00:09.339][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-05 22:00:09.339][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.340][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.340][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-05 22:00:09.342][biodb::testContext]
biodb.INFO [2024-07-05 22:00:09.342][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:00:09.342][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-07-05 22:00:09.343][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-05 22:00:09.343][biodb::testContext]
biodb.INFO [2024-07-05 22:00:09.344][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:00:09.344][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-05 22:00:09.346][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:09.346][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-05 22:00:09.346][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.347][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-05 22:00:09.348][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.349][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-05 22:00:09.349][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.350][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-05 22:00:09.350][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-05 22:00:09.350][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-05 22:00:09.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.351][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-05 22:00:09.351][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-05 22:00:09.352][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.353][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-05 22:00:09.353][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-05 22:00:09.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.354][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-05 22:00:09.354][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-05 22:00:09.354][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-05 22:00:09.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.358][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-05 22:00:09.359][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.360][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-05 22:00:09.360][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-05 22:00:09.360][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-05 22:00:09.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.361][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:00:09.361][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-05 22:00:09.362][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-05 22:00:09.362][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-05 22:00:09.362][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-05 22:00:09.362][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-05 22:00:09.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.363][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-05 22:00:09.364][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-05 22:00:09.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.368][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-05 22:00:09.368][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-05 22:00:09.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.369][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-05 22:00:09.369][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-05 22:00:09.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.370][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-05 22:00:09.371][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-05 22:00:09.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.372][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-05 22:00:09.372][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-05 22:00:09.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.373][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-05 22:00:09.373][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-05 22:00:09.385][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-05 22:00:09.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.386][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-05 22:00:09.386][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-05 22:00:09.387][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-05 22:00:09.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.388][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-05 22:00:09.388][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.389][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-05 22:00:09.389][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.389][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.389][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.390][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.390][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.390][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.391][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:00:09.391][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.391][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.391][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-05 22:00:09.392][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.392][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.392][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.392][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:09.392][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:09.392][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:09.392][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:00:09.392][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:00:09.393][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:09.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.393][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.393][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.394][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.394][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.394][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.395][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.395][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.395][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.395][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.396][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-05 22:00:09.396][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.397][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:00:09.397][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.397][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.397][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.398][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.398][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.398][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.398][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:00:09.399][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.399][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.399][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-05 22:00:09.399][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.400][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.400][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.400][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:09.400][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:09.400][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:09.400][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-05 22:00:09.400][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-05 22:00:09.400][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:09.401][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.401][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.401][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.401][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.402][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.402][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.402][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.402][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.403][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.403][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.403][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.403][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-05 22:00:09.404][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.404][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-05 22:00:09.405][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.405][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.405][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.405][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.406][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.406][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.406][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-05 22:00:09.406][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.407][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.407][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-05 22:00:09.407][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.408][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.408][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.408][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.408][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:09.409][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.409][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.409][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.409][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.410][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.410][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.410][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.410][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.411][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.411][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.411][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.411][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-05 22:00:09.412][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.412][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-05 22:00:09.413][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.413][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.413][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.413][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.414][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.414][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.414][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-05 22:00:09.416][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.416][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.417][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-05 22:00:09.417][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.417][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.417][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.418][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.418][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-05 22:00:09.418][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.419][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.420][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.420][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.420][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.420][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.421][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.421][self$setPropertyValue]
biodb.DEBUG[2024-07-05 22:00:09.421][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:09.421][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.426][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.442][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-05 22:00:09.442][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-05 22:00:09.443][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-05 22:00:09.443][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-05 22:00:09.443][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:00:09.444][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-05 22:00:09.444][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-05 22:00:09.444][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-05 22:00:09.445][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-05 22:00:09.445][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-05 22:00:09.446][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:00:09.446][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-05 22:00:09.446][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-05 22:00:09.447][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-05 22:00:09.447][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-05 22:00:09.448][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-05 22:00:09.448][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-05 22:00:09.448][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-05 22:00:09.449][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:00:09.449][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-05 22:00:09.449][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-05 22:00:09.450][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-05 22:00:09.450][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-05 22:00:09.451][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-05 22:00:09.451][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-05 22:00:09.451][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-05 22:00:09.452][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-05 22:00:09.452][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-05 22:00:09.453][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-05 22:00:09.453][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-05 22:00:09.453][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-05 22:00:09.454][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-05 22:00:09.454][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-05 22:00:09.455][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-05 22:00:09.455][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-05 22:00:09.456][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-05 22:00:09.456][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-05 22:00:09.456][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-05 22:00:09.457][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-05 22:00:09.457][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-05 22:00:09.458][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-05 22:00:09.458][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-05 22:00:09.459][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-05 22:00:09.459][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-05 22:00:09.459][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-05 22:00:09.460][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-05 22:00:09.460][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-05 22:00:09.461][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-05 22:00:09.461][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-05 22:00:09.461][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-05 22:00:09.462][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-05 22:00:09.462][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-05 22:00:09.462][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-05 22:00:09.463][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-05 22:00:09.463][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-05 22:00:09.464][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-05 22:00:09.464][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-05 22:00:09.464][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-05 22:00:09.465][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-05 22:00:09.465][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-05 22:00:09.465][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-05 22:00:09.466][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-05 22:00:09.466][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-05 22:00:09.467][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-05 22:00:09.470][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-05 22:00:09.471][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-05 22:00:09.471][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:00:09.472][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:00:09.472][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-05 22:00:09.472][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-05 22:00:09.473][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-05 22:00:09.473][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-05 22:00:09.473][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-05 22:00:09.474][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-05 22:00:09.474][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-05 22:00:09.475][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-05 22:00:09.475][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-05 22:00:09.475][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-05 22:00:09.476][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-05 22:00:09.476][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-05 22:00:09.476][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-05 22:00:09.477][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-05 22:00:09.477][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-05 22:00:09.478][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-05 22:00:09.478][initialize] This is biodb version 1.13.0.
biodb.DEBUG[2024-07-05 22:00:09.479][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-05 22:00:09.479][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.479][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.480][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.482][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.495][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-05 22:00:09.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-05 22:00:09.507][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-05 22:00:09.508][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-05 22:00:09.508][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.509][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.509][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.509][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-05 22:00:09.510][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.510][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.510][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.510][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-05 22:00:09.511][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-05 22:00:09.511][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-05 22:00:09.511][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.511][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-05 22:00:09.512][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-05 22:00:09.513][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-05 22:00:09.513][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.513][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-05 22:00:09.514][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-05 22:00:09.514][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-05 22:00:09.514][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-05 22:00:09.514][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-05 22:00:09.514][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-05 22:00:09.515][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-05 22:00:09.515][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-05 22:00:09.515][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-05 22:00:09.515][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-05 22:00:09.515][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-05 22:00:09.516][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-05 22:00:09.516][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-05 22:00:09.517][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-05 22:00:09.517][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-05 22:00:09.518][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-05 22:00:09.518][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-05 22:00:09.519][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-05 22:00:09.520][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-05 22:00:09.520][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-05 22:00:09.520][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-05 22:00:09.521][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:00:09.521][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-05 22:00:09.521][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-05 22:00:09.522][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-05 22:00:09.522][biodb::testThat]
biodb.INFO [2024-07-05 22:00:09.522][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-07-05 22:00:09.523][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-05 22:00:09.523][biodb::testThat]
biodb.DEBUG[2024-07-05 22:00:09.524][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-05 22:00:09.525][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.526][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-05 22:00:09.533][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.534][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-05 22:00:09.536][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-05 22:00:09.537][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-05 22:00:09.538][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-05 22:00:09.538][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.539][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-07-05 22:00:09.541][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-07-05 22:00:09.541][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-05 22:00:09.541][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-07-05 22:00:09.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-05 22:00:09.544][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2024-07-05 22:00:09.544][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-05 22:00:09.545][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-05 22:00:09.545][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-05 22:00:09.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-05 22:00:09.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.548][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-05 22:00:09.550][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.550][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.553][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:09.553][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:09.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.553][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-05 22:00:09.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-05 22:00:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.555][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:09.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:09.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.556][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-05 22:00:09.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-05 22:00:09.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-05 22:00:09.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-05 22:00:09.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.558][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.558][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-05 22:00:09.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-05 22:00:09.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.559][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.559][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:09.560][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:09.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.560][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.561][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-05 22:00:09.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.562][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:09.562][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:09.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.562][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-05 22:00:09.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-05 22:00:09.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.564][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:09.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:09.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.565][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.565][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:09.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-05 22:00:09.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.566][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:09.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:09.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.567][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-05 22:00:09.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-05 22:00:09.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.569][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:09.569][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:09.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.569][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-05 22:00:09.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-05 22:00:09.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.571][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:09.571][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:09.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.571][ef$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.572][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-05 22:00:09.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-05 22:00:09.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.573][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:09.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:09.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:09.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:09.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-05 22:00:09.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-05 22:00:09.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-05 22:00:09.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-05 22:00:09.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-05 22:00:09.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-05 22:00:09.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-05 22:00:09.586][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-07-05 22:00:09.588][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-05 22:00:09.588][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-05 22:00:09.588][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-05 22:00:09.589][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-05 22:00:09.589][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-05 22:00:09.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-05 22:00:09.589][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-05 22:00:09.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-05 22:00:09.590][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-05 22:00:09.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
>
> proc.time()
user system elapsed
5.932 0.423 9.962
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 1.002 | 0.553 | 3.272 | |
| ChebiEntry | 0.145 | 0.011 | 0.179 | |