Mustafa Erhan Ozer
| Snapshot Date: 2024-09-26 13:40 -0400 (Thu, 26 Sep 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: a10cc82 |
| git_last_commit_date: 2024-08-30 17:33:50 -0400 (Fri, 30 Aug 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-09-27 12:25 -0400 (Fri, 27 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4451 |
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4417 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4456 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4489 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4436 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4435 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2072/2262 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.5.5 (landing page) Mustafa Erhan Ozer
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.5.5 |
| Command: /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.5.5.tar.gz |
| StartedAt: 2024-09-27 07:58:50 -0400 (Fri, 27 Sep 2024) |
| EndedAt: 2024-09-27 08:03:30 -0400 (Fri, 27 Sep 2024) |
| EllapsedTime: 280.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD check --install=check:SVMDO.install-out.txt --library=/home/biocbuild/bbs-3.20-bioc/R/site-library --timings SVMDO_1.5.5.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0
GNU Fortran (Ubuntu 13.2.0-23ubuntu4) 13.2.0
* running under: Ubuntu 24.04.1 LTS
* using session charset: UTF-8
* checking for file ‘SVMDO/DESCRIPTION’ ... OK
* this is package ‘SVMDO’ version ‘1.5.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SVMDO’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/biocbuild/bbs-3.20-bioc/R/site-library’ * installing *source* package ‘SVMDO’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 5781,3670,94235,353,3170,2896
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4311,1586,83548,383,338328,2334
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3329,10999,9382,7450,79602,4035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6928,3929,8665,7428,7289,56919
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51204,4668,694,629,2166,3423
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7035,551,558,3988,85569,51081
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5625,55283,1803,9415,6929,56052
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55163,2896,3074,1585,2548,51649
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 186,26354,406937,83693,6382,2713
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5476,7480,6928,6462,1471,129787
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2992,26191,55340,4855,632,6515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8504,1355,5255,509,1583,5207
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 655,405,156,4000,27249,114814
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22796,3099,842,1585,563,6374
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7388,1591,1644,2591,959,84889
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2792,7097,91949,133522,1116,2720
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5126,5860,4049,3119,3708,5740
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10845,1859,79087,948,56259,11222
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4889,7292,11222,84902,23304,5213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2157,821,133,5730,5728,79736
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5257,388743,4925,325,111240474,3283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54575,64240,9526,2888,132158,6579
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4668,7384,1056,2592,23462,5213
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1514,10845,462,1340,116931,51021
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9572,48,81570,2524,4312,10423
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 64087,10667,795,3875,23304,5250
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2161,3162,2903,1409,57048,2820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3172,1345,374291,5092,85365,64689
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9409,4702,1339,54539,6928,7295
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2260,5445,3101,361,4351,7515
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5288,5328,55788,9445,64900,10116
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 389,9927,2787,3082,9997,57001
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2888,51241,655,10599,207,6647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 411,1497,84447,5967,4803,2948
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 149461,51422,5723,56999,5950,2495
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5792,4656,3551,5621,1373,867
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3630,6927,6890,1605,1889,2053
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10423,132,6925,3651,28957,7077
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9374,2949,3939,3242,5264,2835
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 101180976,7381,6556,54968,5286,1586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2161,123283,5306,3931,1645,440138
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2475,6519,26003,9451,26235,284958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 539,9945,51119,3692,91452,2752
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 326625,152926,197131,4729,768239,1185
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100303755,79633,4860,1116,5741,4312
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2118,8600,152926,2746,5277,6199
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84705,488,8660,6009,26175,265
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7287,4973,91942,5373,130120,57380
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3673,29928,2697,7386,5740,2790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 948,6770,60386,9420,84693,6522
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1595,54205,5069,4889,81689,5068
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26060,1606,9630,2247,55644,5625
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 819,51024,842,1491,3643,60528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 594,64087,2064,1589,255738,6340
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7157,1813,84902,6678,2888,186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3098,361,2006,129787,4137,796
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3813,22868,788,2571,54575,79944
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3929,3293,6319,1019,1645,51176
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 239,2746,55937,1801,3931,56945
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92935,7097,4609,4899,79661,6329
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 22868,5370,84447,2937,1200,463
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 384,3032,1355,3293,50943,29968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2335,9332,821,407024,10221,6834
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9374,100303755,5369,156,3557,9968
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5207,886,53632,1352,3458,152926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84902,3174,55818,2030,92667,7132
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4149,627,3158,7386,3596,2820
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1621,7381,537,6720,7498,1361
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8604,11222,941,55572,84340,79661
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56997,26517,868,7381,54806,5372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 574447,124454,5745,1543,3440,407009
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4758,3663,2591,53335,3598,2712
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152926,10753,6182,5054,3759,1595
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6514,1605,7350,56923,2200,7274
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11222,51167,51092,54331,84275,3717
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2572,55532,5091,4285,308,79587
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10841,2641,4040,6772,407040,22901
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10753,4729,4719,51099,8862,53905
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9968,3157,570,3351,2280,3339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2786,8431,5836,5295,57678,3162
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54148,56606,123099,6609,216,3416
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1621,5789,1909,196385,6891,599
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55186,210,23395,54567,4247,583
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4842,2767,7100,407010,1361,3596
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1116,29880,28234,1182,6932,28958
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 25974,2787,51103,105372280,2146,5293
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 54901,836,6582,7295,6720,6584
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7030,55902,6319,5744,4712,7528
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 196385,5291,1644,2539,3356,7084
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 43,2166,64240,9374,492,8714
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9091,79796,37,5631,5350,2538
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2876,170302,594,1524,5443,55630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152078,5967,338,156,5590,6183
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84275,57761,1584,477,1499,5498
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 51649,2235,3945,3033,23054,341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11093,729230,63892,10457,5241,9997
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3295,4318,54982,23389,5584,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6462,101180976,2875,3939,18,91647
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10062,479,3290,5194,9388,4247
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338328,2683,89874,3066,5193,2266
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4358,54476,256471,6999,29947,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 100529063,7352,4286,55034,3417,2790
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2587,596,186,3709,567,5095
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10128,4502,2628,389,3309,7471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5590,79144,5599,5901,3995,406922
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 23474,5741,27249,8803,56919,79661
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2572,7287,9630,387787,26517,130120
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 27429,493753,1607,7941,1234,4864
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 836,2919,8879,840,23516,123283
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5306,5264,29947,540,10195,229
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6521,3988,92667,463,1843,84317
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2653,3949,1571,795,91942,339
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2950,151,3813,6448,1491,7275
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91452,4697,2593,153642,2597,55670
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5799,28957,200810,50507,326625,5265
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
89.479 0.778 90.377
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.445 | 0.033 | 0.912 | |