Mustafa Erhan Ozer
| Snapshot Date: 2024-08-15 14:00 -0400 (Thu, 15 Aug 2024) |
| git_url: https://git.bioconductor.org/packages/SVMDO |
| git_branch: devel |
| git_last_commit: b5eba63 |
| git_last_commit_date: 2024-04-30 11:49:19 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-08-16 11:42 -0400 (Fri, 16 Aug 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4420 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4413 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2068/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SVMDO 1.5.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: SVMDO |
| Version: 1.5.0 |
| Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz |
| StartedAt: 2024-08-16 05:41:14 -0400 (Fri, 16 Aug 2024) |
| EndedAt: 2024-08-16 05:46:47 -0400 (Fri, 16 Aug 2024) |
| EllapsedTime: 332.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SVMDO.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'SVMDO/DESCRIPTION' ... OK
* this is package 'SVMDO' version '1.5.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SVMDO' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. Since you have a suitable version of DT (>= v0.32.1), shiny::dataTableOutput() will automatically use DT::DTOutput() under-the-hood. If this happens to break your app, set `options(shiny.legacy.datatable = TRUE)` to get the legacy datatable implementation (or `FALSE` to squelch this message). See <https://rstudio.github.io/DT/shiny.html> for more information. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(SVMDO)
Loading required package: shiny
>
> test_check("SVMDO")
'select()' returned 1:1 mapping between keys and columns
--> No gene can be mapped....
--> Expected input gene ID: 6519,100128525,207,2639,183,4171
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7351,11254,3240,1268,10365,7082
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 107075310,83985,5579,5445,5214,31
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1595,5594,7407,79934,81034,23389
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 239,3074,1591,5331,6569,256471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4705,10686,4580,55526,7078,83440
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7276,411,22877,558,9572,256764
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6183,80724,3290,1056,2878,885
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1893,635,2475,1789,27097,33
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 818,156,2559,8029,4060,8932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 941,166785,9054,759,84239,9563
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 811,488,114884,153,2641,79133
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3605,94235,1277,948,1028,7386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 353,1340,125988,23101,790,3760
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 56623,4795,29078,51092,1019,6476
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2280,909,407009,583,54414,593
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 6608,51004,4041,148713,8675,4880
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 440138,79689,4311,6582,213,2798
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 148713,7385,5825,6716,201305,55005
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 81029,3949,5601,842,170392,60386
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1392,9692,5824,80142,56922,122961
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3170,11254,6647,54822,1909,8567
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3627,7056,50639,5592,4319,2785
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 124454,594,130589,1586,10250,434
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 654,6804,1803,1789,3939,341
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4864,2690,6009,494324,3087,84277
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 200539,7200,65018,10745,5370,1586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7450,728,406906,2539,7054,27035
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1601,54575,25821,6722,4656,3667
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1329,54575,929,9415,1029,29960
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4126,4880,4720,121268,4537,51024
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 153,4716,6748,353,401,23586
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8788,2135,109,66036,5214,7372
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84557,6908,4715,3312,3066,2776
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 60412,51079,2885,1146,2109,22877
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28976,4792,79602,23530,2593,26191
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 28976,4656,26291,7021,8691,100156321
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55486,5979,2487,6530,165,6523
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55768,3250,836,2548,60412,6906
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9420,4489,126328,1890,2878,1182
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2998,9445,5295,55278,140803,4088
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 199,5092,84447,6927,6093,6502
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2590,133,619373,3489,55572,3738
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 255308,92483,63931,3575,793,27445
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 338821,2146,4009,54577,35,25801
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4041,2984,23395,10243,10226,2806
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 84239,155,8517,79144,57017,9630
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4489,4729,4726,55858,1589,152926
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5331,5802,1355,2937,145258,10965
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 92483,4092,779,2875,4803,2932
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 3290,10059,23129,1351,2057,6387
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10000,4715,2026,55644,7076,1270
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5243,2034,1586,8029,9672,4323
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 26517,9514,5190,8714,8764,153
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 643394,100156321,509,3676,583,434
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 211,5631,84063,1497,407024,6521
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 1493,162417,7384,5726,6329,11019
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 249,85479,253559,5919,10295,1789
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2280,7010,2778,91949,4088,211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 9514,8740,23409,187,2161,2303
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 8682,3066,5805,84334,8398,5468
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 79068,91574,3075,26191,3066,477
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2720,7056,1050,2712,3339,211
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 152078,5325,1573,197,3627,51079
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 5770,6530,1737,84342,2762,7471
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 406,5723,3117,2990,2520,8842
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 11019,5826,6941,5329,1033,84701
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 145741,10643,5499,3479,7052,3939
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 50674,182,1557,7291,3566,3728
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2590,5365,116985,4069,5069,1186
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 55816,1392,8773,1234,26060,3242
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4650,51106,55858,3458,217,5589
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 7057,10423,1565,308,5621,7031
--> return NULL...
No gene sets have size between 10 and 500 ...
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 952,336,7345,183,387787,4780
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 91574,29968,84062,643387,55278,1869
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 4159,55748,246,6622,64102,1489
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 114899,1589,10272,57215,6582,9619
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 10686,6915,5023,50814,1346,2786
--> return NULL...
--> No gene can be mapped....
--> Expected input gene ID: 2805,493753,1806,8665,3383,5476
--> return NULL...
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ]
>
> proc.time()
user system elapsed
60.35 1.92 62.54
SVMDO.Rcheck/SVMDO-Ex.timings
| name | user | system | elapsed | |
| runGUI | 0.86 | 0.04 | 0.96 | |