Back to Multiple platform build/check report for BioC 3.20: simplified long |
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This page was generated on 2024-08-16 11:42 -0400 (Fri, 16 Aug 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4703 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4440 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4472 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4420 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4413 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 2068/2255 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SVMDO 1.5.0 (landing page) Mustafa Erhan Ozer
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the SVMDO package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SVMDO.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: SVMDO |
Version: 1.5.0 |
Command: F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz |
StartedAt: 2024-08-16 05:41:14 -0400 (Fri, 16 Aug 2024) |
EndedAt: 2024-08-16 05:46:47 -0400 (Fri, 16 Aug 2024) |
EllapsedTime: 332.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SVMDO.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SVMDO.install-out.txt --library=F:\biocbuild\bbs-3.20-bioc\R\library --no-vignettes --timings SVMDO_1.5.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.20-bioc/meat/SVMDO.Rcheck' * using R version 4.4.1 (2024-06-14 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'SVMDO/DESCRIPTION' ... OK * this is package 'SVMDO' version '1.5.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'SVMDO' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
SVMDO.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL SVMDO ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'SVMDO' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading `shiny::dataTableOutput()` is deprecated as of shiny 1.8.1. Please use `DT::DTOutput()` instead. Since you have a suitable version of DT (>= v0.32.1), shiny::dataTableOutput() will automatically use DT::DTOutput() under-the-hood. If this happens to break your app, set `options(shiny.legacy.datatable = TRUE)` to get the legacy datatable implementation (or `FALSE` to squelch this message). See <https://rstudio.github.io/DT/shiny.html> for more information. ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SVMDO)
SVMDO.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(SVMDO) Loading required package: shiny > > test_check("SVMDO") 'select()' returned 1:1 mapping between keys and columns --> No gene can be mapped.... --> Expected input gene ID: 6519,100128525,207,2639,183,4171 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 7351,11254,3240,1268,10365,7082 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 107075310,83985,5579,5445,5214,31 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1595,5594,7407,79934,81034,23389 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 239,3074,1591,5331,6569,256471 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4705,10686,4580,55526,7078,83440 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 7276,411,22877,558,9572,256764 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6183,80724,3290,1056,2878,885 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1893,635,2475,1789,27097,33 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 818,156,2559,8029,4060,8932 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 941,166785,9054,759,84239,9563 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 811,488,114884,153,2641,79133 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3605,94235,1277,948,1028,7386 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 353,1340,125988,23101,790,3760 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 56623,4795,29078,51092,1019,6476 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2280,909,407009,583,54414,593 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 6608,51004,4041,148713,8675,4880 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 440138,79689,4311,6582,213,2798 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 148713,7385,5825,6716,201305,55005 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 81029,3949,5601,842,170392,60386 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1392,9692,5824,80142,56922,122961 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3170,11254,6647,54822,1909,8567 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3627,7056,50639,5592,4319,2785 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 124454,594,130589,1586,10250,434 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 654,6804,1803,1789,3939,341 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4864,2690,6009,494324,3087,84277 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 200539,7200,65018,10745,5370,1586 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 7450,728,406906,2539,7054,27035 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1601,54575,25821,6722,4656,3667 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1329,54575,929,9415,1029,29960 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4126,4880,4720,121268,4537,51024 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 153,4716,6748,353,401,23586 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 8788,2135,109,66036,5214,7372 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 84557,6908,4715,3312,3066,2776 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 60412,51079,2885,1146,2109,22877 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 28976,4792,79602,23530,2593,26191 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 28976,4656,26291,7021,8691,100156321 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 55486,5979,2487,6530,165,6523 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 55768,3250,836,2548,60412,6906 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 9420,4489,126328,1890,2878,1182 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2998,9445,5295,55278,140803,4088 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 199,5092,84447,6927,6093,6502 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2590,133,619373,3489,55572,3738 --> return NULL... No gene sets have size between 10 and 500 ... --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 255308,92483,63931,3575,793,27445 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 338821,2146,4009,54577,35,25801 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4041,2984,23395,10243,10226,2806 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 84239,155,8517,79144,57017,9630 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4489,4729,4726,55858,1589,152926 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5331,5802,1355,2937,145258,10965 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 92483,4092,779,2875,4803,2932 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 3290,10059,23129,1351,2057,6387 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 10000,4715,2026,55644,7076,1270 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5243,2034,1586,8029,9672,4323 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 26517,9514,5190,8714,8764,153 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 643394,100156321,509,3676,583,434 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 211,5631,84063,1497,407024,6521 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 1493,162417,7384,5726,6329,11019 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 249,85479,253559,5919,10295,1789 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2280,7010,2778,91949,4088,211 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 9514,8740,23409,187,2161,2303 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 8682,3066,5805,84334,8398,5468 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 79068,91574,3075,26191,3066,477 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2720,7056,1050,2712,3339,211 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 152078,5325,1573,197,3627,51079 --> return NULL... No gene sets have size between 10 and 500 ... --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 5770,6530,1737,84342,2762,7471 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 406,5723,3117,2990,2520,8842 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 11019,5826,6941,5329,1033,84701 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 145741,10643,5499,3479,7052,3939 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 50674,182,1557,7291,3566,3728 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2590,5365,116985,4069,5069,1186 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 55816,1392,8773,1234,26060,3242 --> return NULL... No gene sets have size between 10 and 500 ... --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4650,51106,55858,3458,217,5589 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 7057,10423,1565,308,5621,7031 --> return NULL... No gene sets have size between 10 and 500 ... --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 952,336,7345,183,387787,4780 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 91574,29968,84062,643387,55278,1869 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 4159,55748,246,6622,64102,1489 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 114899,1589,10272,57215,6582,9619 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 10686,6915,5023,50814,1346,2786 --> return NULL... --> No gene can be mapped.... --> Expected input gene ID: 2805,493753,1806,8665,3383,5476 --> return NULL... [ FAIL 0 | WARN 0 | SKIP 0 | PASS 4 ] > > proc.time() user system elapsed 60.35 1.92 62.54
SVMDO.Rcheck/SVMDO-Ex.timings
name | user | system | elapsed | |
runGUI | 0.86 | 0.04 | 0.96 | |