BioC experimental data: CHECK report for KEGGdzPathwaysGEO on perceval

Package: KEGGdzPathwaysGEO

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.7.0.tar.gz

StartedAt: 2015-08-22 09:31:00 -0700 (Sat, 22 Aug 2015)

EndedAt: 2015-08-22 09:41:47 -0700 (Sat, 22 Aug 2015)

EllapsedTime: 646.6 seconds

RetCode: 0

Status:  OK

CheckDir: KEGGdzPathwaysGEO.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.7.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.2.2 Patched (2015-08-14 r69078)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... [3s/9s] OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [7s/9s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.2-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

name	user	system	elapsed
GSE1297	0.175	0.011	0.202
GSE14762	0.232	0.023	0.336
GSE15471	0.460	0.058	0.660
GSE16515	0.275	0.036	0.448
GSE18842	0.557	0.080	0.851
GSE19188	0.831	0.154	1.213
GSE19728	0.167	0.011	0.237
GSE20153	0.145	0.007	0.174
GSE20291	0.092	0.011	0.113
GSE21354	0.158	0.010	0.202
GSE3467	0.221	0.033	0.325
GSE3585	0.056	0.003	0.082
GSE3678	0.137	0.013	0.220
GSE4107	0.168	0.012	0.234
GSE5281_EC	0.161	0.020	0.224
GSE5281_HIP	0.172	0.022	0.303
GSE5281_VCX	0.210	0.028	0.295
GSE6956AA	0.066	0.055	0.143
GSE6956C	0.063	0.006	0.104
GSE781	0.061	0.007	0.090
GSE8671	0.363	0.059	0.610
GSE8762	0.174	0.011	0.211
GSE9348	0.447	0.088	0.669
GSE9476	0.147	0.013	0.170
KEGGdzPathwaysGEO-package	0.454	0.061	0.632