KEGGdzPathwaysGEO 1.8.0
Gaurav Bhatti
| Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/KEGGdzPathwaysGEO | | Last Changed Rev: 3460 / Revision: 3730 | | Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015) |
| zin1 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| moscato1 | Windows Server 2008 R2 Standard (64-bit) / x64 | NotNeeded | OK | [ OK ] | OK | |
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### Running command:
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### rm -rf KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO.Rcheck && mkdir KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO.Rcheck && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=KEGGdzPathwaysGEO.buildbin-libdir KEGGdzPathwaysGEO_1.8.0.tar.gz >KEGGdzPathwaysGEO.Rcheck\00install.out 2>&1 && cp KEGGdzPathwaysGEO.Rcheck\00install.out KEGGdzPathwaysGEO-install.out && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD check --library=KEGGdzPathwaysGEO.buildbin-libdir --install="check:KEGGdzPathwaysGEO-install.out" --force-multiarch --no-vignettes --timings KEGGdzPathwaysGEO_1.8.0.tar.gz
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* using log directory 'D:/biocbld/bbs-3.2-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck'
* using R version 3.2.4 (2016-03-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGdzPathwaysGEO/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KEGGdzPathwaysGEO' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'KEGGdzPathwaysGEO' can be installed ... OK
* checking installed package size ... NOTE
installed size is 300.7Mb
sub-directories of 1Mb or more:
data 300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
'Biobase' 'BiocGenerics'
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [167s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
GSE19188 0.92 0.04 29.86
GSE18842 0.67 0.06 20.20
GSE15471 0.61 0.00 25.46
GSE8671 0.37 0.05 7.87
GSE14762 0.25 0.00 12.11
GSE16515 0.21 0.01 6.71
GSE21354 0.19 0.01 5.85
GSE20153 0.17 0.02 6.52
GSE19728 0.17 0.01 8.59
GSE3585 0.08 0.00 5.72
GSE1297 0.06 0.00 5.84
** running examples for arch 'x64' ... [6s] OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'D:/biocbld/bbs-3.2-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'KEGGdzPathwaysGEO' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'KEGGdzPathwaysGEO' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'KEGGdzPathwaysGEO' as KEGGdzPathwaysGEO_1.8.0.zip
* DONE (KEGGdzPathwaysGEO)