| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:49 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MACPET package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACPET.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1029/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MACPET 1.14.0 (landing page) Ioannis Vardaxis
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: MACPET |
| Version: 1.14.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MACPET_1.14.0.tar.gz && rm -rf MACPET.buildbin-libdir && mkdir MACPET.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MACPET.buildbin-libdir MACPET_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MACPET_1.14.0.zip && rm MACPET_1.14.0.tar.gz MACPET_1.14.0.zip |
| StartedAt: 2022-04-12 06:38:31 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 06:38:49 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 18.2 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/MACPET_1.14.0.tar.gz && rm -rf MACPET.buildbin-libdir && mkdir MACPET.buildbin-libdir && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=MACPET.buildbin-libdir MACPET_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL MACPET_1.14.0.zip && rm MACPET_1.14.0.tar.gz MACPET_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
83 850k 83 714k 0 0 1274k 0 --:--:-- --:--:-- --:--:-- 1273k
100 850k 100 850k 0 0 1417k 0 --:--:-- --:--:-- --:--:-- 1417k
install for i386
* installing *source* package 'MACPET' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Stage_0_FastqFilteringSubFunctions.cpp -o Stage_0_FastqFilteringSubFunctions.o
Stage_0_FastqFilteringSubFunctions.cpp: In function 'SEXPREC* FilterFastqYield_fun_Rcpp(int&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::__cxx11::string&, std::__cxx11::string&, int&, int&, int&)':
Stage_0_FastqFilteringSubFunctions.cpp:55:36: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
~~~~~~~~~~~~~~~~~~~~~~~~^~~~
Stage_0_FastqFilteringSubFunctions.cpp:55:66: warning: comparison of integer expressions of different signedness: 'std::__cxx11::basic_string<char>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
~~~~~~~~~~~~~~~~~~~~~~~~^~~~
"C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.14-/R/include" -DNDEBUG -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'C:/Users/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Stage_3_PeakFinderSubFunctions.cpp -o Stage_3_PeakFinderSubFunctions.o
Stage_3_PeakFinderSubFunctions.cpp: In function 'void Mstep2D_Rcpp(Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, const int&, const int&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericMatrix&, const NumericMatrix&)':
Stage_3_PeakFinderSubFunctions.cpp:1146:76: error: 'DOUBLE_EPS' was not declared in this scope
double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1146:76: note: suggested alternative: 'ENABLE_NLS'
double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
^~~~~~~~~~
ENABLE_NLS
Stage_3_PeakFinderSubFunctions.cpp: In function 'void NR_lambdax_g_Rcpp(double&, const double&, const double&, const double&)':
Stage_3_PeakFinderSubFunctions.cpp:1217:45: error: 'DOUBLE_EPS' was not declared in this scope
if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1217:45: note: suggested alternative: 'ENABLE_NLS'
if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
^~~~~~~~~~
ENABLE_NLS
Stage_3_PeakFinderSubFunctions.cpp:1218:50: error: 'DOUBLE_EPS' was not declared in this scope
if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1218:50: note: suggested alternative: 'ENABLE_NLS'
if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
^~~~~~~~~~
ENABLE_NLS
Stage_3_PeakFinderSubFunctions.cpp: In function 'void NR_lambday_g_Rcpp(double&, const double&, const double&, const double&)':
Stage_3_PeakFinderSubFunctions.cpp:1257:48: error: 'DOUBLE_EPS' was not declared in this scope
if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1257:48: note: suggested alternative: 'ENABLE_NLS'
if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
^~~~~~~~~~
ENABLE_NLS
Stage_3_PeakFinderSubFunctions.cpp:1258:44: error: 'DOUBLE_EPS' was not declared in this scope
if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1258:44: note: suggested alternative: 'ENABLE_NLS'
if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
^~~~~~~~~~
ENABLE_NLS
make: *** [C:/Users/BIOCBU~1/BBS-3~1.14-/R/etc/i386/Makeconf:245: Stage_3_PeakFinderSubFunctions.o] Error 1
ERROR: compilation failed for package 'MACPET'
* removing 'C:/Users/biocbuild/bbs-3.14-bioc/meat/MACPET.buildbin-libdir/MACPET'