| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:05:33 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MACPET package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MACPET.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1029/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MACPET 1.14.0 (landing page) Ioannis Vardaxis
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | ERROR | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| Package: MACPET |
| Version: 1.14.0 |
| Command: /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL MACPET |
| StartedAt: 2022-04-12 03:38:47 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 03:39:00 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 13.3 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.14-bioc/R/bin/R CMD INSTALL MACPET
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* installing to library ‘/home/biocbuild/bbs-3.14-bioc/R/library’
* installing *source* package ‘MACPET’ ...
** using staged installation
** libs
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c Stage_0_FastqFilteringSubFunctions.cpp -o Stage_0_FastqFilteringSubFunctions.o
Stage_0_FastqFilteringSubFunctions.cpp: In function ‘SEXPREC* FilterFastqYield_fun_Rcpp(int&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::vector<std::__cxx11::basic_string<char> >&, Rcpp::NumericVector&, std::string&, std::string&, int&, int&, int&)’:
Stage_0_FastqFilteringSubFunctions.cpp:55:36: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
55 | if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
Stage_0_FastqFilteringSubFunctions.cpp:55:66: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
55 | if(SreadFastq1[i].find(NNs)!=-1||SreadFastq2[i].find(NNs)!=-1){
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/bigmemory/include' -I'/home/biocbuild/bbs-3.14-bioc/R/library/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -c Stage_3_PeakFinderSubFunctions.cpp -o Stage_3_PeakFinderSubFunctions.o
Stage_3_PeakFinderSubFunctions.cpp: In function ‘void Mstep2D_Rcpp(Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, Rcpp::NumericVector&, const int&, const int&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericVector&, const NumericMatrix&, const NumericMatrix&)’:
Stage_3_PeakFinderSubFunctions.cpp:1146:76: error: ‘DOUBLE_EPS’ was not declared in this scope
1146 | double Ak_g=1.0/std::max(1.0-B_my_g[g-1]/C_my_g[g-1],std::sqrt(DOUBLE_EPS));
| ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp: In function ‘void NR_lambdax_g_Rcpp(double&, const double&, const double&, const double&)’:
Stage_3_PeakFinderSubFunctions.cpp:1217:45: error: ‘DOUBLE_EPS’ was not declared in this scope
1217 | if(lambdax>=0.0) lambdax=-std::sqrt(DOUBLE_EPS);
| ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1218:50: error: ‘DOUBLE_EPS’ was not declared in this scope
1218 | if(lambdax<=-1.0) lambdax=-1.0+std::sqrt(DOUBLE_EPS);
| ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp: In function ‘void NR_lambday_g_Rcpp(double&, const double&, const double&, const double&)’:
Stage_3_PeakFinderSubFunctions.cpp:1257:48: error: ‘DOUBLE_EPS’ was not declared in this scope
1257 | if(lambday>=1.0) lambday=1.0-std::sqrt(DOUBLE_EPS);
| ^~~~~~~~~~
Stage_3_PeakFinderSubFunctions.cpp:1258:44: error: ‘DOUBLE_EPS’ was not declared in this scope
1258 | if(lambday<=0.0) lambday=std::sqrt(DOUBLE_EPS);
| ^~~~~~~~~~
make: *** [/home/biocbuild/bbs-3.14-bioc/R/etc/Makeconf:175: Stage_3_PeakFinderSubFunctions.o] Error 1
ERROR: compilation failed for package ‘MACPET’
* removing ‘/home/biocbuild/bbs-3.14-bioc/R/library/MACPET’