| Back to Multiple platform build/check report for BioC 3.14 |
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This page was generated on 2022-04-13 12:06:35 -0400 (Wed, 13 Apr 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4324 |
| tokay2 | Windows Server 2012 R2 Standard | x64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4077 |
| machv2 | macOS 10.14.6 Mojave | x86_64 | 4.1.3 (2022-03-10) -- "One Push-Up" | 4137 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the GDCRNATools package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GDCRNATools.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 709/2083 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GDCRNATools 1.14.0 (landing page) Ruidong Li
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | ERROR | skipped | skipped | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| Package: GDCRNATools |
| Version: 1.14.0 |
| Command: chmod a+r GDCRNATools -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GDCRNATools |
| StartedAt: 2022-04-12 10:48:19 -0400 (Tue, 12 Apr 2022) |
| EndedAt: 2022-04-12 10:49:45 -0400 (Tue, 12 Apr 2022) |
| EllapsedTime: 85.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### chmod a+r GDCRNATools -R && C:\Users\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data GDCRNATools
###
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* checking for file 'GDCRNATools/DESCRIPTION' ... OK
* preparing 'GDCRNATools':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'GDCRNATools.Rmd' using rmarkdown
Registered S3 method overwritten by 'ggtree':
method from
identify.gg ggfun
##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.
The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
Removed 0 samples
Removed 0 samples
Quitting from lines 110-125 (GDCRNATools.Rmd)
Error: processing vignette 'GDCRNATools.Rmd' failed with diagnostics:
contrasts can be applied only to factors with 2 or more levels
--- failed re-building 'GDCRNATools.Rmd'
--- re-building 'index.Rmd' using rmarkdown
--- finished re-building 'index.Rmd'
SUMMARY: processing the following file failed:
'GDCRNATools.Rmd'
Error: Vignette re-building failed.
Execution halted