| Back to Build/check report for BioC 3.13 on Apple's new arm64 arch |
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This page was generated on 2021-01-31 03:53:37 -0500 (Sun, 31 Jan 2021).
| These are experimental builds on Apple's new arm64 arch. See here for more information. |
|
To the developers/maintainers of the triplex package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1864/1938 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| triplex 1.31.0 Jiri Hon
| taxco | macOS 11.0.1 Big Sur / arm64 | OK | NA | NA | |||||||||
| Package: triplex |
| Version: 1.31.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL triplex |
| StartedAt: 2021-01-30 16:28:09 -0500 (Sat, 30 Jan 2021) |
| EndedAt: 2021-01-30 16:28:42 -0500 (Sat, 30 Jan 2021) |
| EllapsedTime: 33.1 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL triplex ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’ * installing *source* package ‘triplex’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Biostrings_stubs.c -o Biostrings_stubs.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c IRanges_stubs.c -o IRanges_stubs.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_init_triplex.c -o R_init_triplex.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c XVector_stubs.c -o XVector_stubs.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c align.c -o align.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c align_interface.c -o align_interface.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dl_list.c -o dl_list.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c interval.c -o interval.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c libtriplex.c -o libtriplex.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c progress.c -o progress.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c search.c -o search.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/XVector/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Biostrings/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c search_interface.c -o search_interface.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o triplex.so Biostrings_stubs.o IRanges_stubs.o R_init_triplex.o XVector_stubs.o align.o align_interface.o dl_list.o interval.o libtriplex.o progress.o search.o search_interface.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-triplex/00new/triplex/libs ** R ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’ ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’ ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: replacing previous import ‘grid::pattern’ by ‘Biostrings::pattern’ when loading ‘triplex’ ** testing if installed package keeps a record of temporary installation path * DONE (triplex)