| Back to Build/check report for BioC 3.13 on Apple's new arm64 arch |
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This page was generated on 2021-01-31 03:53:37 -0500 (Sun, 31 Jan 2021).
| These are experimental builds on Apple's new arm64 arch. See here for more information. |
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To the developers/maintainers of the seqbias package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1645/1938 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| seqbias 1.39.0 Daniel Jones
| taxco | macOS 11.0.1 Big Sur / arm64 | ERROR | NA | NA | |||||||||
| Package: seqbias |
| Version: 1.39.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL seqbias |
| StartedAt: 2021-01-30 16:27:49 -0500 (Sat, 30 Jan 2021) |
| EndedAt: 2021-01-30 16:27:54 -0500 (Sat, 30 Jan 2021) |
| EllapsedTime: 4.9 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL seqbias
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘seqbias’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include -Wall -Wextra -I. -fPIC -falign-functions=64 -Wall -g -O2 -c sam.c -o sam.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include -Wall -Wextra -I. -fPIC -falign-functions=64 -Wall -g -O2 -c bam_plbuf.c -o bam_plbuf.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include -Wall -Wextra -I. -fPIC -falign-functions=64 -Wall -g -O2 -c bam_aux.c -o bam_aux.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include -Wall -Wextra -I. -fPIC -falign-functions=64 -Wall -g -O2 -c common.c -o common.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include -Wall -Wextra -I. -fPIC -falign-functions=64 -Wall -g -O2 -c miscmath.c -o miscmath.o
miscmath.c:21:12: error: implicitly declaring library function 'finite' with type 'int (double)' [-Werror,-Wimplicit-function-declaration]
return finite(a) && 0.0 <= a && a <= 1.0;
^
miscmath.c:21:12: note: include the header <math.h> or explicitly provide a declaration for 'finite'
1 error generated.
make: *** [miscmath.o] Error 1
ERROR: compilation failed for package ‘seqbias’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/seqbias’