Back to Build/check report for BioC 3.13 on Apple's new arm64 arch
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

INSTALL report for runibic on taxco

This page was generated on 2021-01-31 03:53:37 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the runibic package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1570/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
runibic 1.13.0
Patryk Orzechowski
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/runibic
Branch: master
Last Commit: 5caa949
Last Changed Date: 2020-10-27 11:29:49 -0500 (Tue, 27 Oct 2020)
taxcomacOS 11.0.1 Big Sur / arm64  ERROR    NA    NA  

Summary

Package: runibic
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL runibic
StartedAt: 2021-01-30 17:39:37 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 17:39:43 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 6.4 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL runibic
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘runibic’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c GlobalDefs.cpp -o GlobalDefs.o
In file included from GlobalDefs.cpp:24:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
GlobalDefs.cpp:26:10: fatal error: 'omp.h' file not found
#include <omp.h>
         ^~~~~~~
1 warning and 1 error generated.
make: *** [GlobalDefs.o] Error 1
ERROR: compilation failed for package ‘runibic’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/runibic’