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INSTALL report for rama on taxco

This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the rama package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1416/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rama 1.65.0
Raphael Gottardo
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/rama
Branch: master
Last Commit: 13191da
Last Changed Date: 2020-10-27 10:23:33 -0500 (Tue, 27 Oct 2020)
taxcomacOS 11.0.1 Big Sur / arm64  OK    NA    NA  

Summary

Package: rama
Version: 1.65.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL rama
StartedAt: 2021-01-30 16:05:04 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 16:05:11 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 6.6 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL rama
###
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##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘rama’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c estimation_slice.c -o estimation_slice.o
estimation_slice.c:121:10: warning: unused variable 'SSeps_sd' [-Wunused-variable]
  double SSeps_sd=0.;
         ^
estimation_slice.c:115:25: warning: unused variable 'dens_epsilon_new' [-Wunused-variable]
  double dens_epsilon=0,dens_epsilon_new=0;
                        ^
estimation_slice.c:122:10: warning: unused variable 'SSeps_sd_new' [-Wunused-variable]
  double SSeps_sd_new=0.;
         ^
estimation_slice.c:116:17: warning: unused variable 'SSR2' [-Wunused-variable]
  double SSR1=0,SSR2=0,SS12=0;
                ^
estimation_slice.c:116:10: warning: unused variable 'SSR1' [-Wunused-variable]
  double SSR1=0,SSR2=0,SS12=0;
         ^
estimation_slice.c:116:24: warning: unused variable 'SS12' [-Wunused-variable]
  double SSR1=0,SSR2=0,SS12=0;
                       ^
estimation_slice.c:117:10: warning: unused variable 'pi' [-Wunused-variable]
  double pi=3.14;
         ^
estimation_slice.c:113:10: warning: unused variable 'lambda_eps1_new' [-Wunused-variable]
  double lambda_eps1_new, lambda_eps2_new;
         ^
estimation_slice.c:113:27: warning: unused variable 'lambda_eps2_new' [-Wunused-variable]
  double lambda_eps1_new, lambda_eps2_new;
                          ^
estimation_slice.c:114:22: warning: unused variable 'l_epsilon_new' [-Wunused-variable]
  double l_epsilon=0,l_epsilon_new=0;
                     ^
estimation_slice.c:114:10: warning: unused variable 'l_epsilon' [-Wunused-variable]
  double l_epsilon=0,l_epsilon_new=0;
         ^
estimation_slice.c:115:10: warning: unused variable 'dens_epsilon' [-Wunused-variable]
  double dens_epsilon=0,dens_epsilon_new=0;
         ^
12 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c ex_estimation_slice.c -o ex_estimation_slice.o
ex_estimation_slice.c:119:19: warning: unused variable 'dens_t_new' [-Wunused-variable]
  double dens_t=0,dens_t_new=0;
                  ^
ex_estimation_slice.c:119:10: warning: unused variable 'dens_t' [-Wunused-variable]
  double dens_t=0,dens_t_new=0;
         ^
ex_estimation_slice.c:144:10: warning: unused variable 'old_a' [-Wunused-variable]
  double old_a=0,width_a=1.;
         ^
ex_estimation_slice.c:137:10: warning: unused variable 'sum_res1' [-Wunused-variable]
  double sum_res1;
         ^
ex_estimation_slice.c:138:10: warning: unused variable 'sum_res2' [-Wunused-variable]
  double sum_res2;
         ^
ex_estimation_slice.c:112:10: warning: unused variable 'pi' [-Wunused-variable]
  double pi=3.14;
         ^
ex_estimation_slice.c:143:10: warning: unused variable 'old_b' [-Wunused-variable]
  double old_b=0,width_b=5.;
         ^
7 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c mean.sd.c -o mean.sd.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c reorder.c -o reorder.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c util.c -o util.o
util.c:574:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k;
          ^
util.c:629:13: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses]
  while(K>0 & (z<log_f_L | z<log_f_R))
        ~~~~^
util.c:629:13: note: place parentheses around the '>' expression to silence this warning
  while(K>0 & (z<log_f_L | z<log_f_R))
            ^
        (  )
util.c:629:13: note: place parentheses around the & expression to evaluate it first
  while(K>0 & (z<log_f_L | z<log_f_R))
            ^
          (                          )
util.c:613:13: warning: unused variable 'v' [-Wunused-variable]
  double u, v, L, R, z, a1;
            ^
util.c:703:13: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses]
  while(K>0 & (z<log_f_L | z<log_f_R))
        ~~~~^
util.c:703:13: note: place parentheses around the '>' expression to silence this warning
  while(K>0 & (z<log_f_L | z<log_f_R))
            ^
        (  )
util.c:703:13: note: place parentheses around the & expression to evaluate it first
  while(K>0 & (z<log_f_L | z<log_f_R))
            ^
          (                          )
util.c:686:13: warning: unused variable 'v' [-Wunused-variable]
  double u, v, L, R, z, b1;
            ^
util.c:876:13: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses]
  while(K>0 & (z<log_f_L | z<log_f_R))
        ~~~~^
util.c:876:13: note: place parentheses around the '>' expression to silence this warning
  while(K>0 & (z<log_f_L | z<log_f_R))
            ^
        (  )
util.c:876:13: note: place parentheses around the & expression to evaluate it first
  while(K>0 & (z<log_f_L | z<log_f_R))
            ^
          (                          )
util.c:860:13: warning: unused variable 'v' [-Wunused-variable]
  double u, v, L, R, z, rho_new;
            ^
util.c:1019:13: warning: & has lower precedence than >; > will be evaluated first [-Wparentheses]
  while(K>0 & (z<log_f_L | z<log_f_R))
        ~~~~^
util.c:1019:13: note: place parentheses around the '>' expression to silence this warning
  while(K>0 & (z<log_f_L | z<log_f_R))
            ^
        (  )
util.c:1019:13: note: place parentheses around the & expression to evaluate it first
  while(K>0 & (z<log_f_L | z<log_f_R))
            ^
          (                          )
util.c:1000:13: warning: unused variable 'v' [-Wunused-variable]
  double u, v, L, R, z, shift_new;
            ^
util.c:1082:13: warning: unused variable 'v' [-Wunused-variable]
  double u, v, L, R, z, shift_new;
            ^
10 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o rama.so estimation_slice.o ex_estimation_slice.o mean.sd.o reorder.o util.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-rama/00new/rama/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rama)