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INSTALL report for qpgraph on taxco

This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the qpgraph package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1394/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qpgraph 2.25.4
Robert Castelo
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/qpgraph
Branch: master
Last Commit: 50d1120
Last Changed Date: 2021-01-08 02:21:10 -0500 (Fri, 08 Jan 2021)
taxcomacOS 11.0.1 Big Sur / arm64  OK    NA    NA  

Summary

Package: qpgraph
Version: 2.25.4
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL qpgraph
StartedAt: 2021-01-30 17:39:49 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 17:41:42 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 113.6 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL qpgraph
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘qpgraph’ ...
** using staged installation
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... aarch64-apple-darwin20.1.0
checking host system type... aarch64-apple-darwin20.1.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include  -I/opt/R/arm64/include  -falign-functions=64 -Wall -g -O2 -Wall -pedantic -Werror=implicit-function-declaration -fPIC  -falign-functions=64 -Wall -g -O2  -c cliquer.c -o cliquer.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include  -I/opt/R/arm64/include  -falign-functions=64 -Wall -g -O2 -Wall -pedantic -Werror=implicit-function-declaration -fPIC  -falign-functions=64 -Wall -g -O2  -c graph.c -o graph.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include  -I/opt/R/arm64/include  -falign-functions=64 -Wall -g -O2 -Wall -pedantic -Werror=implicit-function-declaration -fPIC  -falign-functions=64 -Wall -g -O2  -c qpgraph.c -o qpgraph.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include  -I/opt/R/arm64/include  -falign-functions=64 -Wall -g -O2 -Wall -pedantic -Werror=implicit-function-declaration -fPIC  -falign-functions=64 -Wall -g -O2  -c reorder.c -o reorder.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-qpgraph/00new/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’
Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘eQTLnetworks.Rnw’ 
   ‘qpTxRegNet.Rnw’ 
   ‘qpgraphSimulate.Rnw’ 
** testing if installed package can be loaded from temporary location
No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’
** testing if installed package keeps a record of temporary installation path
* DONE (qpgraph)