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INSTALL report for pqsfinder on taxco

This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the pqsfinder package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1344/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
pqsfinder 2.7.0
Jiri Hon
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/pqsfinder
Branch: master
Last Commit: fb24f95
Last Changed Date: 2020-10-27 11:13:58 -0500 (Tue, 27 Oct 2020)
taxcomacOS 11.0.1 Big Sur / arm64  OK    NA    NA  

Summary

Package: pqsfinder
Version: 2.7.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL pqsfinder
StartedAt: 2021-01-30 16:27:56 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 16:29:53 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 117.5 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL pqsfinder
###
##############################################################################
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘pqsfinder’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
1 warning generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c pqsfinder.cpp -o pqsfinder.o
In file included from pqsfinder.cpp:13:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
In file included from pqsfinder.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
                                                                        ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   return regex_search(first, last, m, e, flags, first);
          ^
pqsfinder.cpp:298:19: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
    return boost::regex_search(start, end, boost_m, run_re_c, boost::match_default);
                  ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:2135:28: note: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1030:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1019:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
2 warnings generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/c_regex_traits.cpp -o boost_regex/c_regex_traits.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/cpp_regex_traits.cpp -o boost_regex/cpp_regex_traits.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/cregex.cpp -o boost_regex/cregex.o
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_match.hpp:49:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const char *, std::__1::allocator<boost::sub_match<const char *> >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, first);
                                                                        ^
boost_regex/cregex.cpp:208:7: note: in instantiation of function template specialization 'boost::regex_match<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   if(regex_match(p, end, pdata->m, pdata->e, flags))
      ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:2135:28: note: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1030:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1019:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_grep.hpp:53:84: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, match_allocator_type, traits> matcher(first, last, m, e, flags, first);
                                                                                   ^
boost_regex/cregex.cpp:409:15: note: in instantiation of function template specialization 'boost::regex_grep<boost::re_detail_107500::pred4, boost::re_detail_107500::mapfile_iterator, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
      int r = regex_grep(pred, map.begin(), map.end(), pdata->e, flags);
              ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:2135:28: note: 'auto_ptr<boost::match_results<boost::re_detail_107500::mapfile_iterator, std::__1::allocator<boost::sub_match<boost::re_detail_107500::mapfile_iterator> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1030:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1019:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from boost_regex/cregex.cpp:22:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
                                                                        ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
   return regex_search(first, last, m, e, flags, first);
          ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_iterator.hpp:58:14: note: in instantiation of function template specialization 'boost::regex_search<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > >, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >' requested here
      return regex_search(first, end, what, re, flags);
             ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_iterator.hpp:109:18: note: in instantiation of member function 'boost::regex_iterator_implementation<std::__1::__wrap_iter<const char *>, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::init' requested here
      if(!pdata->init(a))
                 ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_replace.hpp:46:57: note: in instantiation of member function 'boost::regex_iterator<std::__1::__wrap_iter<const char *>, char, boost::regex_traits<char, boost::cpp_regex_traits<char> > >::regex_iterator' requested here
   regex_iterator<BidirectionalIterator, charT, traits> i(first, last, e, flags);
                                                        ^
boost_regex/cregex.cpp:461:4: note: in instantiation of function template specialization 'boost::regex_replace<boost::re_detail_107500::string_out_iterator<std::__1::basic_string<char> >, std::__1::__wrap_iter<const char *>, boost::regex_traits<char, boost::cpp_regex_traits<char> >, char, const char *>' requested here
   regex_replace(i, in.begin(), in.end(), pdata->e, fmt.c_str(), flags);
   ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:2135:28: note: 'auto_ptr<boost::match_results<std::__1::__wrap_iter<const char *>, std::__1::allocator<boost::sub_match<std::__1::__wrap_iter<const char *> > > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1030:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1019:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
3 warnings generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/fileiter.cpp -o boost_regex/fileiter.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/icu.cpp -o boost_regex/icu.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/instances.cpp -o boost_regex/instances.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/posix_api.cpp -o boost_regex/posix_api.o
In file included from boost_regex/posix_api.cpp:23:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const char *, std::__1::allocator<boost::sub_match<const char *> >, boost::c_regex_traits<char> >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
                                                                        ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::c_regex_traits<char> >' requested here
   return regex_search(first, last, m, e, flags, first);
          ^
boost_regex/posix_api.cpp:248:16: note: in instantiation of function template specialization 'boost::regex_search<const char *, std::__1::allocator<boost::sub_match<const char *> >, char, boost::c_regex_traits<char> >' requested here
      result = regex_search(start, end, m, *static_cast<c_regex_type*>(expression->guts), flags);
               ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:2135:28: note: 'auto_ptr<boost::match_results<const char *, std::__1::allocator<boost::sub_match<const char *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1030:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1019:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
1 warning generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/regex.cpp -o boost_regex/regex.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/regex_debug.cpp -o boost_regex/regex_debug.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/regex_raw_buffer.cpp -o boost_regex/regex_raw_buffer.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/regex_traits_defaults.cpp -o boost_regex/regex_traits_defaults.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/static_mutex.cpp -o boost_regex/static_mutex.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/usinstances.cpp -o boost_regex/usinstances.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/w32_regex_traits.cpp -o boost_regex/w32_regex_traits.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/wc_regex_traits.cpp -o boost_regex/wc_regex_traits.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/wide_posix_api.cpp -o boost_regex/wide_posix_api.o
In file included from boost_regex/wide_posix_api.cpp:25:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex.hpp:31:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex.hpp:32:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_workaround.hpp:42:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/scoped_ptr.hpp:13:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/smart_ptr/scoped_ptr.hpp:74:31: warning: 'auto_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' is deprecated [-Wdeprecated-declarations]
    explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
                              ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/perl_matcher.hpp:477:56: note: in instantiation of template class 'boost::scoped_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' requested here
   scoped_ptr<match_results<BidiIterator, Allocator> > m_temp_match;
                                                       ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:55:73: note: in instantiation of template class 'boost::re_detail_107500::perl_matcher<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, boost::c_regex_traits<wchar_t> >' requested here
   BOOST_REGEX_DETAIL_NS::perl_matcher<BidiIterator, Allocator, traits> matcher(first, last, m, e, flags, base);
                                                                        ^
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include/boost/regex/v4/regex_search.hpp:42:11: note: in instantiation of function template specialization 'boost::regex_search<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, wchar_t, boost::c_regex_traits<wchar_t> >' requested here
   return regex_search(first, last, m, e, flags, first);
          ^
boost_regex/wide_posix_api.cpp:264:16: note: in instantiation of function template specialization 'boost::regex_search<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> >, wchar_t, boost::c_regex_traits<wchar_t> >' requested here
      result = regex_search(start, end, m, *static_cast<wc_regex_type*>(expression->guts), flags);
               ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/memory:2135:28: note: 'auto_ptr<boost::match_results<const wchar_t *, std::__1::allocator<boost::sub_match<const wchar_t *> > > >' has been explicitly marked deprecated here
class _LIBCPP_TEMPLATE_VIS _LIBCPP_DEPRECATED_IN_CXX11 auto_ptr
                           ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1030:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/../include/c++/v1/__config:1019:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
1 warning generated.
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c boost_regex/winstances.cpp -o boost_regex/winstances.o
mkdir -p "/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib"
ar rs "/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a" boost_regex/c_regex_traits.o boost_regex/cpp_regex_traits.o boost_regex/cregex.o boost_regex/fileiter.o boost_regex/icu.o boost_regex/instances.o boost_regex/posix_api.o boost_regex/regex.o boost_regex/regex_debug.o boost_regex/regex_raw_buffer.o boost_regex/regex_traits_defaults.o boost_regex/static_mutex.o boost_regex/usinstances.o boost_regex/w32_regex_traits.o boost_regex/wc_regex_traits.o boost_regex/wide_posix_api.o boost_regex/winstances.o
ar: creating archive /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a
clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o pqsfinder.so RcppExports.o pqsfinder.o /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/lib/libboost_regex.a -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-pqsfinder/00new/pqsfinder/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pqsfinder)