Back to Build/check report for BioC 3.13 on Apple's new arm64 arch
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

INSTALL report for flowPeaks on taxco

This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the flowPeaks package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 623/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.37.0
Yongchao Ge
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/flowPeaks
Branch: master
Last Commit: 740c559
Last Changed Date: 2020-10-27 10:46:03 -0500 (Tue, 27 Oct 2020)
taxcomacOS 11.0.1 Big Sur / arm64  ERROR    NA    NA  

Summary

Package: flowPeaks
Version: 1.37.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowPeaks
StartedAt: 2021-01-30 16:04:42 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 16:04:44 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 1.9 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL flowPeaks
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘flowPeaks’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  `gsl-config --cflags`  -fPIC  -falign-functions=64 -Wall -g -O2  -c Rpack.cpp -o Rpack.o
/bin/sh: gsl-config: command not found
In file included from Rpack.cpp:16:
./gvector_gmatrix.h:24:10: fatal error: 'gsl/gsl_math.h' file not found
#include <gsl/gsl_math.h>
         ^~~~~~~~~~~~~~~~
1 error generated.
make: *** [Rpack.o] Error 1
ERROR: compilation failed for package ‘flowPeaks’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/flowPeaks’