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INSTALL report for biovizBase on taxco

This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the biovizBase package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 187/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biovizBase 1.39.0
Michael Lawrence
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/biovizBase
Branch: master
Last Commit: eba27b0
Last Changed Date: 2021-01-05 14:10:06 -0500 (Tue, 05 Jan 2021)
taxcomacOS 11.0.1 Big Sur / arm64  OK    NA    NA  

Summary

Package: biovizBase
Version: 1.39.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL biovizBase
StartedAt: 2021-01-30 18:41:23 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 18:42:47 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 83.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL biovizBase
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘biovizBase’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_biovizBase.c -o R_init_biovizBase.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bin_offsets.c -o bin_offsets.o
bin_offsets.c:57:15: warning: passing 'Rbyte *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
  if (strncmp(b, "BAI\1", 4))
              ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/string.h:84:26: note: passing argument to parameter '__s1' here
int      strncmp(const char *__s1, const char *__s2, size_t __n);
                             ^
1 warning generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o biovizBase.so R_init_biovizBase.o bin_offsets.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-biovizBase/00new/biovizBase/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biovizBase)