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INSTALL report for XVector on taxco

This page was generated on 2021-01-31 03:53:37 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the XVector package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1930/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
XVector 0.31.1
Hervé Pagès
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/XVector
Branch: master
Last Commit: 349f3aa
Last Changed Date: 2020-12-11 20:40:04 -0500 (Fri, 11 Dec 2020)
taxcomacOS 11.0.1 Big Sur / arm64  OK    NA    NA  

Summary

Package: XVector
Version: 0.31.1
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL XVector
StartedAt: 2021-01-30 16:25:57 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 16:26:28 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 30.8 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL XVector
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘XVector’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c IRanges_stubs.c -o IRanges_stubs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c RDS_random_access.c -o RDS_random_access.o
RDS_random_access.c:796:18: warning: unused variable 'ans' [-Wunused-variable]
        SEXP subscript, ans;
                        ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c R_init_XVector.c -o R_init_XVector.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c SharedDouble_class.c -o SharedDouble_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c SharedInteger_class.c -o SharedInteger_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c SharedRaw_class.c -o SharedRaw_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c SharedVector_class.c -o SharedVector_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c XDouble_class.c -o XDouble_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c XInteger_class.c -o XInteger_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c XRawList_comparison.c -o XRawList_comparison.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c XRaw_class.c -o XRaw_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c XVectorList_class.c -o XVectorList_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c XVector_class.c -o XVector_class.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c io_utils.c -o io_utils.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c slice_methods.c -o slice_methods.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c vector_copy.c -o vector_copy.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/IRanges/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c view_summarization_methods.c -o view_summarization_methods.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o RDS_random_access.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XDouble_class.o XInteger_class.o XRawList_comparison.o XRaw_class.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-XVector/00new/XVector/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (XVector)