This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL Rhisat2
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘Rhisat2’ ...
** using staged installation
** libs
** arch -
/usr/bin/g++ -O3 -m64 -msse2 -funroll-loops -g3 -DCOMPILER_OPTIONS="\"-O3 -m64 -msse2 -funroll-loops -g3 -DPOPCNT_CAPABILITY\"" -DPOPCNT_CAPABILITY \
-fno-strict-aliasing -DHISAT2_VERSION="\"`cat VERSION`\"" -DBUILD_HOST="\"`hostname`\"" -DBUILD_TIME="\"`date`\"" -DCOMPILER_VERSION="\"`/usr/bin/g++ -v 2>&1 | tail -1`\"" -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -DBOWTIE_MM -DBOWTIE2 -DNDEBUG -Wall -DMASSIVE_DATA_RLCSA \
-I third_party \
-o hisat2-build-s hisat2_build.cpp \
ccnt_lut.cpp ref_read.cpp alphabet.cpp shmem.cpp edit.cpp gfm.cpp reference.cpp ds.cpp multikey_qsort.cpp limit.cpp random_source.cpp tinythread.cpp diff_sample.cpp hisat2_build_main.cpp \
-lpthread
In file included from hisat2_build.cpp:35:
In file included from ./gfm.h:61:
In file included from ./processor_support.h:17:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:11:2: error: this header is for x86 only
#error this header is for x86 only
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:271:5: error: invalid output constraint '=a' in asm
__cpuid(__leaf, __eax, __ebx, __ecx, __edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:236:11: note: expanded from macro '__cpuid'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:286:5: error: invalid output constraint '=a' in asm
__cpuid(__leaf, *__eax, *__ebx, *__ecx, *__edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:236:11: note: expanded from macro '__cpuid'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:300:5: error: invalid output constraint '=a' in asm
__cpuid_count(__leaf, __subleaf, *__eax, *__ebx, *__ecx, *__edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:243:11: note: expanded from macro '__cpuid_count'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
4 errors generated.
In file included from edit.cpp:21:
In file included from ./edit.h:30:
In file included from ./splice_site.h:34:
In file included from ./gfm.h:61:
In file included from ./processor_support.h:17:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:11:2: error: this header is for x86 only
#error this header is for x86 only
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:271:5: error: invalid output constraint '=a' in asm
__cpuid(__leaf, __eax, __ebx, __ecx, __edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:236:11: note: expanded from macro '__cpuid'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:286:5: error: invalid output constraint '=a' in asm
__cpuid(__leaf, *__eax, *__ebx, *__ecx, *__edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:236:11: note: expanded from macro '__cpuid'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:300:5: error: invalid output constraint '=a' in asm
__cpuid_count(__leaf, __subleaf, *__eax, *__ebx, *__ecx, *__edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:243:11: note: expanded from macro '__cpuid_count'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
4 errors generated.
In file included from gfm.cpp:21:
In file included from ./gfm.h:61:
In file included from ./processor_support.h:17:
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:11:2: error: this header is for x86 only
#error this header is for x86 only
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:271:5: error: invalid output constraint '=a' in asm
__cpuid(__leaf, __eax, __ebx, __ecx, __edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:236:11: note: expanded from macro '__cpuid'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:286:5: error: invalid output constraint '=a' in asm
__cpuid(__leaf, *__eax, *__ebx, *__ecx, *__edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:236:11: note: expanded from macro '__cpuid'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:300:5: error: invalid output constraint '=a' in asm
__cpuid_count(__leaf, __subleaf, *__eax, *__ebx, *__ecx, *__edx);
^
/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/12.0.0/include/cpuid.h:243:11: note: expanded from macro '__cpuid_count'
: "=a"(__eax), "=r" (__ebx), "=c"(__ecx), "=d"(__edx) \
^
4 errors generated.
make: *** [hisat2-build-s] Error 1
ERROR: compilation failed for package ‘Rhisat2’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhisat2’