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INSTALL report for RJMCMCNucleosomes on taxco

This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the RJMCMCNucleosomes package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1506/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RJMCMCNucleosomes 1.15.0
Astrid Deschênes
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/RJMCMCNucleosomes
Branch: master
Last Commit: 6a59a4b
Last Changed Date: 2020-10-27 11:20:36 -0500 (Tue, 27 Oct 2020)
taxcomacOS 11.0.1 Big Sur / arm64  ERROR    NA    NA  

Summary

Package: RJMCMCNucleosomes
Version: 1.15.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RJMCMCNucleosomes
StartedAt: 2021-01-30 18:00:01 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 18:00:08 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 6.4 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RJMCMCNucleosomes
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘RJMCMCNucleosomes’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG `gsl-config --cflags` -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c NucleoDirichlet.cpp -o NucleoDirichlet.o
/bin/sh: gsl-config: command not found
In file included from NucleoDirichlet.cpp:7:
In file included from ./NucleoDirichlet.h:12:
In file included from ./Nucleosome.h:11:
In file included from /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include/Rcpp.h:57:
/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include/Rcpp/DataFrame.h:136:18: warning: unused variable 'data' [-Wunused-variable]
            SEXP data = Parent::get__();
                 ^
In file included from NucleoDirichlet.cpp:7:
In file included from ./NucleoDirichlet.h:12:
./Nucleosome.h:13:10: fatal error: 'gsl/gsl_randist.h' file not found
#include <gsl/gsl_randist.h>
         ^~~~~~~~~~~~~~~~~~~
1 warning and 1 error generated.
make: *** [NucleoDirichlet.o] Error 1
ERROR: compilation failed for package ‘RJMCMCNucleosomes’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/RJMCMCNucleosomes’