Back to Build/check report for BioC 3.13 on Apple's new arm64 arch |
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This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).
These are experimental builds on Apple's new arm64 arch. See here for more information. |
To the developers/maintainers of the NetPathMiner package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1193/1938 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
NetPathMiner 1.27.0 Ahmed Mohamed
| taxco | macOS 11.0.1 Big Sur / arm64 | ERROR | NA | NA | |||||||||
Package: NetPathMiner |
Version: 1.27.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NetPathMiner |
StartedAt: 2021-01-30 16:26:37 -0500 (Sat, 30 Jan 2021) |
EndedAt: 2021-01-30 16:26:51 -0500 (Sat, 30 Jan 2021) |
EllapsedTime: 13.5 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NetPathMiner ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’ * installing *source* package ‘NetPathMiner’ ... ** using staged installation 'config' variable 'CPP' is defunct checking for gcc... clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking how to run the C preprocessor... clang -E checking for xmlParseFile in -lxml2... yes checking for readSBML in -lsbml... no untarring boost include tree... SBML not found. libXML2 found checking for xml2-config... /opt/R/arm64/bin/xml2-config configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I . -I/opt/R/arm64/include -DHAVE_XML -I/opt/R/arm64/include/libxml2 -fPIC -falign-functions=64 -Wall -g -O2 -c PathRanker.cpp -o PathRanker.o In file included from PathRanker.cpp:23: In file included from ./boost/graph/graph_utility.hpp:30: In file included from ./boost/graph/properties.hpp:19: In file included from ./boost/property_map/property_map.hpp:844: In file included from ./boost/property_map/vector_property_map.hpp:14: In file included from ./boost/shared_ptr.hpp:17: In file included from ./boost/smart_ptr/shared_ptr.hpp:32: In file included from ./boost/smart_ptr/detail/shared_count.hpp:29: ./boost/smart_ptr/detail/sp_counted_base.hpp:60:11: fatal error: 'boost/smart_ptr/detail/sp_counted_base_sync.hpp' file not found # include <boost/smart_ptr/detail/sp_counted_base_sync.hpp> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1 error generated. make: *** [PathRanker.o] Error 1 ERROR: compilation failed for package ‘NetPathMiner’ * removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/NetPathMiner’