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INSTALL report for NetPathMiner on taxco

This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the NetPathMiner package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 1193/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NetPathMiner 1.27.0
Ahmed Mohamed
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/NetPathMiner
Branch: master
Last Commit: 8453f82
Last Changed Date: 2020-10-27 10:56:36 -0500 (Tue, 27 Oct 2020)
taxcomacOS 11.0.1 Big Sur / arm64  ERROR    NA    NA  

Summary

Package: NetPathMiner
Version: 1.27.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NetPathMiner
StartedAt: 2021-01-30 16:26:37 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 16:26:51 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 13.5 seconds
RetCode: 1
Status:   ERROR  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL NetPathMiner
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘NetPathMiner’ ...
** using staged installation
'config' variable 'CPP' is defunct
checking for gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -E
checking for xmlParseFile in -lxml2... yes
checking for readSBML in -lsbml... no
untarring boost include tree...
SBML not found.
libXML2 found
checking for xml2-config... /opt/R/arm64/bin/xml2-config
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include  -I . -I/opt/R/arm64/include -DHAVE_XML -I/opt/R/arm64/include/libxml2 -fPIC  -falign-functions=64 -Wall -g -O2  -c PathRanker.cpp -o PathRanker.o
In file included from PathRanker.cpp:23:
In file included from ./boost/graph/graph_utility.hpp:30:
In file included from ./boost/graph/properties.hpp:19:
In file included from ./boost/property_map/property_map.hpp:844:
In file included from ./boost/property_map/vector_property_map.hpp:14:
In file included from ./boost/shared_ptr.hpp:17:
In file included from ./boost/smart_ptr/shared_ptr.hpp:32:
In file included from ./boost/smart_ptr/detail/shared_count.hpp:29:
./boost/smart_ptr/detail/sp_counted_base.hpp:60:11: fatal error: 'boost/smart_ptr/detail/sp_counted_base_sync.hpp' file not found
# include <boost/smart_ptr/detail/sp_counted_base_sync.hpp>
          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [PathRanker.o] Error 1
ERROR: compilation failed for package ‘NetPathMiner’
* removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/NetPathMiner’