Back to Build/check report for BioC 3.13 on Apple's new arm64 arch |
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This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).
These are experimental builds on Apple's new arm64 arch. See here for more information. |
To the developers/maintainers of the HDF5Array package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 805/1938 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HDF5Array 1.19.0 Hervé Pagès
| taxco | macOS 11.0.1 Big Sur / arm64 | OK | NA | NA | |||||||||
Package: HDF5Array |
Version: 1.19.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HDF5Array |
StartedAt: 2021-01-30 16:54:44 -0500 (Sat, 30 Jan 2021) |
EndedAt: 2021-01-30 16:55:29 -0500 (Sat, 30 Jan 2021) |
EllapsedTime: 45.7 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL HDF5Array ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’ * installing *source* package ‘HDF5Array’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ChunkIterator.c -o ChunkIterator.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c H5DSetDescriptor.c -o H5DSetDescriptor.o H5DSetDescriptor.c:83:29: warning: format specifies type 'long' but the argument has type 'hid_t' (aka 'long long') [-Wformat] "to predef type id", native_type_id); ^~~~~~~~~~~~~~ ./global_errmsg_buf.h:9:62: note: expanded from macro 'PRINT_TO_ERRMSG_BUF' snprintf(_HDF5Array_global_errmsg_buf(), ERRMSG_BUF_LENGTH, __VA_ARGS__) ^~~~~~~~~~~ /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:57:62: note: expanded from macro 'snprintf' __builtin___snprintf_chk (str, len, 0, __darwin_obsz(str), __VA_ARGS__) ^~~~~~~~~~~ H5DSetDescriptor.c:155:42: warning: format specifies type 'long' but the argument has type 'hid_t' (aka 'long long') [-Wformat] sprintf(s, "unknown native type (%ld)", native_type_id); ~~~ ^~~~~~~~~~~~~~ %lld /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf' __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__) ^~~~~~~~~~~ 2 warnings generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_init_HDF5Array.c -o R_init_HDF5Array.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c S4Vectors_stubs.c -o S4Vectors_stubs.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c global_errmsg_buf.c -o global_errmsg_buf.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c h5dimscales.c -o h5dimscales.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c h5mread.c -o h5mread.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c h5mread_helpers.c -o h5mread_helpers.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c h5mread_index.c -o h5mread_index.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c h5mread_sparse.c -o h5mread_sparse.o h5mread_sparse.c:123:13: warning: unused function 'NOT_USED_make_nzindex_from_buf' [-Wunused-function] static SEXP NOT_USED_make_nzindex_from_buf(const IntAE *nzindex_buf, ^ h5mread_sparse.c:179:13: warning: unused function 'NOT_USED_make_nzdata_from_IntAE_bufs' [-Wunused-function] static SEXP NOT_USED_make_nzdata_from_IntAE_bufs(const IntAEAE *nzdata_bufs, ^ h5mread_sparse.c:206:13: warning: unused function 'NOT_USED_make_nzindex_from_bufs' [-Wunused-function] static SEXP NOT_USED_make_nzindex_from_bufs(const IntAEAE *nzindex_bufs, ^ 3 warnings generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c h5mread_startscounts.c -o h5mread_startscounts.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c h5summarize.c -o h5summarize.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/S4Vectors/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c uaselection.c -o uaselection.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o HDF5Array.so ChunkIterator.o H5DSetDescriptor.o R_init_HDF5Array.o S4Vectors_stubs.o global_errmsg_buf.o h5dimscales.o h5mread.o h5mread_helpers.o h5mread_index.o h5mread_sparse.o h5mread_startscounts.o h5summarize.o uaselection.o /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/lib/libhdf5_hl.a /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/lib/libhdf5.a /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rhdf5lib/lib/libsz.a -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-HDF5Array/00new/HDF5Array/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HDF5Array)