Back to Build/check report for BioC 3.13 on Apple's new arm64 arch |
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This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).
These are experimental builds on Apple's new arm64 arch. See here for more information. |
To the developers/maintainers of the GeneSelectMMD package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 689/1938 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GeneSelectMMD 2.35.0 Weiliang Qiu
| taxco | macOS 11.0.1 Big Sur / arm64 | OK | NA | NA | |||||||||
Package: GeneSelectMMD |
Version: 2.35.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GeneSelectMMD |
StartedAt: 2021-01-30 16:25:48 -0500 (Sat, 30 Jan 2021) |
EndedAt: 2021-01-30 16:26:08 -0500 (Sat, 30 Jan 2021) |
EllapsedTime: 19.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GeneSelectMMD ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’ * installing *source* package ‘GeneSelectMMD’ ... ** using staged installation ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c Qfunc.f -o Qfunc.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c blas.f -o blas.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c isnan.c -o isnan.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c lbfgsb.f -o lbfgsb.o lbfgsb.f:1409:25: 1409 | + tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm, | ^ Warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized] lbfgsb.f:1482:72: 1482 | t(nbreak) = tl/(-neggi) | ^ Warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized] /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c lbfgsbDriver.f -o lbfgsbDriver.o lbfgsbDriver.f:243:71: 243 | + wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax) | 1 Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider using ‘-frecursive’, or increase the ‘-fmax-stack-var-size=’ limit, or change the code to use an ALLOCATABLE array. [-Wsurprising] /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c linpack.f -o linpack.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c llkhFun.f -o llkhFun.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c myTtest.f -o myTtest.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c paraEstLoop.f -o paraEstLoop.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c pt.c -o pt.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c timer.f -o timer.o /opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls -fPIC -Wall -g -O2 -c wiFun.f -o wiFun.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: could not create compact unwind for _negqfunc_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _dnegqfunc_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _prn3lb_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _matupd_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _prn2lb_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _dcsrch_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _lnsrlb_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _subsm_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _bmv_: registers 25 and 26 not saved contiguously in frame ld: warning: could not create compact unwind for _freev_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _cauchy_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _active_: registers 19 and 20 not saved contiguously in frame ld: warning: could not create compact unwind for _mainlb_: registers 72 and 73 not saved contiguously in frame ld: warning: could not create compact unwind for _setulb_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _lbfgsbdriver_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _dtrsl_: registers 25 and 26 not saved contiguously in frame ld: warning: could not create compact unwind for _llkhfun_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _myttest_: register 75 saved somewhere other than in frame ld: warning: could not create compact unwind for _paraestloop_: registers 27 and 28 not saved contiguously in frame ld: warning: could not create compact unwind for _wifun_: registers 78 and 79 not saved contiguously in frame ld: warning: could not create compact unwind for _dcopy_: register 22 saved somewhere other than in frame installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GeneSelectMMD)