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INSTALL report for GeneSelectMMD on taxco

This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).

These are experimental builds on Apple's new arm64 arch. See here for more information.
To the developers/maintainers of the GeneSelectMMD package:
Please make sure to use the following settings in order to reproduce any error or warning you see on this page.
Package 689/1938HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GeneSelectMMD 2.35.0
Weiliang Qiu
Snapshot Date: 2021-01-30 14:40:03 -0500 (Sat, 30 Jan 2021)
URL: https://git.bioconductor.org/packages/GeneSelectMMD
Branch: master
Last Commit: 031b695
Last Changed Date: 2020-10-27 10:35:25 -0500 (Tue, 27 Oct 2020)
taxcomacOS 11.0.1 Big Sur / arm64  OK    NA    NA  

Summary

Package: GeneSelectMMD
Version: 2.35.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GeneSelectMMD
StartedAt: 2021-01-30 16:25:48 -0500 (Sat, 30 Jan 2021)
EndedAt: 2021-01-30 16:26:08 -0500 (Sat, 30 Jan 2021)
EllapsedTime: 19.9 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL GeneSelectMMD
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘GeneSelectMMD’ ...
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c GeneSelectMMD_init.c -o GeneSelectMMD_init.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c Qfunc.f -o Qfunc.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c blas.f -o blas.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c isnan.c -o isnan.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c lbfgsb.f -o lbfgsb.o
lbfgsb.f:1409:25:

 1409 |      +                 tu,tl,wmc,wmp,wmw,ddot,tj,tj0,neggi,sbgnrm,
      |                         ^
Warning: ‘tu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
lbfgsb.f:1482:72:

 1482 |                t(nbreak) = tl/(-neggi)
      |                                                                        ^
Warning: ‘tl’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c lbfgsbDriver.f -o lbfgsbDriver.o
lbfgsbDriver.f:243:71:

  243 |      +                 wa(2*mmax*nmax + 5*nmax + 11*mmax*mmax + 8*mmax)
      |                                                                       1
Warning: Array ‘wa’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider using ‘-frecursive’, or increase the ‘-fmax-stack-var-size=’ limit, or change the code to use an ALLOCATABLE array. [-Wsurprising]
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c linpack.f -o linpack.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c llkhFun.f -o llkhFun.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c myTtest.f -o myTtest.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c paraEstLoop.f -o paraEstLoop.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c pt.c -o pt.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c timer.f -o timer.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c wiFun.f -o wiFun.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o GeneSelectMMD.so GeneSelectMMD_init.o Qfunc.o blas.o isnan.o lbfgsb.o lbfgsbDriver.o linpack.o llkhFun.o myTtest.o paraEstLoop.o pt.o timer.o wiFun.o -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _negqfunc_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _dnegqfunc_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _prn3lb_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _matupd_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _prn2lb_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _dcsrch_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _lnsrlb_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _subsm_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _bmv_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _freev_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _cauchy_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _active_: registers 19 and 20 not saved contiguously in frame
ld: warning: could not create compact unwind for _mainlb_: registers 72 and 73 not saved contiguously in frame
ld: warning: could not create compact unwind for _setulb_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _lbfgsbdriver_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _dtrsl_: registers 25 and 26 not saved contiguously in frame
ld: warning: could not create compact unwind for _llkhfun_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _myttest_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _paraestloop_: registers 27 and 28 not saved contiguously in frame
ld: warning: could not create compact unwind for _wifun_: registers 78 and 79 not saved contiguously in frame
ld: warning: could not create compact unwind for _dcopy_: register 22 saved somewhere other than in frame
installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-GeneSelectMMD/00new/GeneSelectMMD/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GeneSelectMMD)