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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL DNAcopy
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’
* installing *source* package ‘DNAcopy’ ...
** using staged installation
** libs
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c cbsWtstats.f -o cbsWtstats.o
cbsWtstats.f:283:72:

  283 |       iseg(2) = tmaxj
      |                                                                        ^
Warning: ‘tmaxj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
cbsWtstats.f:282:72:

  282 |       iseg(1) = tmaxi
      |                                                                        ^
Warning: ‘tmaxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c cbststats.f -o cbststats.o
cbststats.f:258:72:

  258 |                      tmaxj = sxmxi + i2j
      |                                                                        ^
Warning: ‘sxmxi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c changepoints-wtd.f -o changepoints-wtd.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c changepoints.f -o changepoints.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c esegment.f -o esegment.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c flchoose.c -o flchoose.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c fphyper.c -o fphyper.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c fpnorm.c -o fpnorm.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c getbdry.f -o getbdry.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c prune.f -o prune.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c rshared.c -o rshared.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c segmentp.f -o segmentp.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c smoothCNA.f -o smoothCNA.o
/opt/R/arm64/bin/gfortran -mtune=native -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c tailprobs.f -o tailprobs.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.2.0/11.0.0 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: could not create compact unwind for _wtmaxo_: registers 74 and 75 not saved contiguously in frame
ld: warning: could not create compact unwind for _wtmaxp_: register 77 saved somewhere other than in frame
ld: warning: could not create compact unwind for _hwtmaxp_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _wtpermp_: register 77 saved somewhere other than in frame
ld: warning: could not create compact unwind for _wfindcpt_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _tpermp_: registers 74 and 75 not saved contiguously in frame
ld: warning: could not create compact unwind for _fndcpt_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _etabdry_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _getbdry_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _prune_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _tmaxo_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _tmaxp_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _htmaxp_: register 73 saved somewhere other than in frame
ld: warning: could not create compact unwind for _smoothlr_: register 75 saved somewhere other than in frame
ld: warning: could not create compact unwind for _nu_: register 77 saved somewhere other than in frame
ld: warning: could not create compact unwind for _tailp_: register 77 saved somewhere other than in frame
installing to /Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/00LOCK-DNAcopy/00new/DNAcopy/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DNAcopy)