| Back to Build/check report for BioC 3.13 on Apple's new arm64 arch |
|
This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).
| These are experimental builds on Apple's new arm64 arch. See here for more information. |
|
To the developers/maintainers of the CoGAPS package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 348/1938 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| CoGAPS 3.11.2 Elana J. Fertig
| taxco | macOS 11.0.1 Big Sur / arm64 | ERROR | NA | NA | |||||||||
| Package: CoGAPS |
| Version: 3.11.2 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CoGAPS |
| StartedAt: 2021-01-30 17:09:51 -0500 (Sat, 30 Jan 2021) |
| EndedAt: 2021-01-30 17:10:01 -0500 (Sat, 30 Jan 2021) |
| EllapsedTime: 10.0 seconds |
| RetCode: 1 |
| Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CoGAPS ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’ * installing *source* package ‘CoGAPS’ ... ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether clang++ -std=gnu++11 accepts -g... yes checking how to run the C++ preprocessor... clang++ -std=gnu++11 -E checking whether we are using the GNU C++ compiler... (cached) yes checking whether clang++ -std=gnu++11 accepts -g... (cached) yes ./configure: line 2752: AX_COMPILER_VENDOR: command not found ./configure: line 2753: AX_COMPILER_VERSION: command not found ./configure: line 2764: AX_OPENMP: command not found building on compiler version Using AVX instructions if available configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DBOOST_MATH_PROMOTE_DOUBLE_POLICY=0 -DGAPS_DISABLE_CHECKPOINTS -D__GAPS_R_BUILD__ -Iinclude -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I/opt/R/arm64/include -march=native -fPIC -falign-functions=64 -Wall -g -O2 -c Cogaps.cpp -o Cogaps.o clang: error: the clang compiler does not support '-march=native' make: *** [Cogaps.o] Error 1 ERROR: compilation failed for package ‘CoGAPS’ * removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/CoGAPS’