Back to Build/check report for BioC 3.13 on Apple's new arm64 arch |
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This page was generated on 2021-01-31 03:53:36 -0500 (Sun, 31 Jan 2021).
These are experimental builds on Apple's new arm64 arch. See here for more information. |
To the developers/maintainers of the ChemmineOB package: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 274/1938 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ChemmineOB 1.29.4 Thomas Girke
| taxco | macOS 11.0.1 Big Sur / arm64 | ERROR | NA | NA | |||||||||
Package: ChemmineOB |
Version: 1.29.4 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ChemmineOB |
StartedAt: 2021-01-30 16:33:50 -0500 (Sat, 30 Jan 2021) |
EndedAt: 2021-01-30 16:34:00 -0500 (Sat, 30 Jan 2021) |
EllapsedTime: 10.6 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ChemmineOB ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library’ * installing *source* package ‘ChemmineOB’ ... ** using staged installation checking for pkg-config... /opt/R/arm64/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for OPENBABEL... no checking for OPENBABEL... no checking for gcc... clang checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether clang accepts -g... yes checking for clang option to accept ISO C89... none needed checking how to run the C preprocessor... clang -E configure: creating ./config.status config.status: creating src/Makevars ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/include/openbabel3 -I/usr/include/eigen3 -DUSE_BOOST -DHAVE_EIGEN -I/usr/local/Cellar/eigen/3.3.8_1/include/eigen3 -I/usr/local/Cellar/open-babel/3.1.1_1/include/openbabel3 -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c ChemmineOB.cpp -o ChemmineOB.o ChemmineOB.cpp:1569:10: fatal error: 'openbabel/obutil.h' file not found #include <openbabel/obutil.h> ^~~~~~~~~~~~~~~~~~~~ 1 error generated. make: *** [ChemmineOB.o] Error 1 ERROR: compilation failed for package ‘ChemmineOB’ * removing ‘/Library/Frameworks/R.framework/Versions/4.1-arm64/Resources/library/ChemmineOB’