Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:26 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ttgsea package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ttgsea.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1973/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ttgsea 1.0.0 (landing page) Dongmin Jung
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ttgsea |
Version: 1.0.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ttgsea.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ttgsea_1.0.0.tar.gz |
StartedAt: 2021-10-15 07:01:49 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 07:06:02 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 252.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ttgsea.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ttgsea.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings ttgsea_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/ttgsea.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ttgsea/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'ttgsea' version '1.0.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ttgsea' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed text_token 4 0.27 17.98 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed predict_model 33.89 1.14 26.97 fit_model 27.31 1.07 28.40 token_vector 2.68 0.11 16.17 text_token 2.59 0.07 16.66 * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'testthat.R' OK ** running tests for arch 'x64' ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ttgsea.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/ttgsea_1.0.0.tar.gz && rm -rf ttgsea.buildbin-libdir && mkdir ttgsea.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ttgsea.buildbin-libdir ttgsea_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL ttgsea_1.0.0.zip && rm ttgsea_1.0.0.tar.gz ttgsea_1.0.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 140k 100 140k 0 0 613k 0 --:--:-- --:--:-- --:--:-- 615k install for i386 * installing *source* package 'ttgsea' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'ttgsea' finding HTML links ... done bi_gru html bi_lstm html fit_model html metric_pearson_correlation html plot_model html predict_model html sampling_generator html text_token html token_vector html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'ttgsea' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'ttgsea' as ttgsea_1.0.0.zip * DONE (ttgsea) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'ttgsea' successfully unpacked and MD5 sums checked
ttgsea.Rcheck/tests_i386/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: i386-w64-mingw32/i386 (32-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ttgsea) Loading required package: keras > > test_check("ttgsea") == Skipped tests =============================================================== * Python is not available on this system (13) [ FAIL 0 | WARN 0 | SKIP 13 | PASS 0 ] > > proc.time() user system elapsed 6.70 0.46 7.15 |
ttgsea.Rcheck/tests_x64/testthat.Rout R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ttgsea) Loading required package: keras > > test_check("ttgsea") 2021-10-15 07:05:32.006671: I tensorflow/core/platform/cpu_feature_guard.cc:142] Your CPU supports instructions that this TensorFlow binary was not compiled to use: AVX2 Train on 1420 samples 32/1420 [..............................] - ETA: 3:11 - loss: 1.8816 - pearson_correlation: -0.0398 96/1420 [=>............................] - ETA: 1:02 - loss: 1.6625 - pearson_correlation: 0.0598 128/1420 [=>............................] - ETA: 46s - loss: 1.6288 - pearson_correlation: -0.0142 192/1420 [===>..........................] - ETA: 29s - loss: 1.6205 - pearson_correlation: 0.0282 224/1420 [===>..........................] - ETA: 25s - loss: 1.6522 - pearson_correlation: 0.0165 256/1420 [====>.........................] - ETA: 21s - loss: 1.5908 - pearson_correlation: -0.0079 288/1420 [=====>........................] - ETA: 19s - loss: 1.5778 - pearson_correlation: 0.0098 320/1420 [=====>........................] - ETA: 16s - loss: 1.5805 - pearson_correlation: 0.0229 352/1420 [======>.......................] - ETA: 15s - loss: 1.5612 - pearson_correlation: 0.0133 384/1420 [=======>......................] - ETA: 13s - loss: 1.5868 - pearson_correlation: 0.0237 416/1420 [=======>......................] - ETA: 12s - loss: 1.5744 - pearson_correlation: 0.0166 448/1420 [========>.....................] - ETA: 11s - loss: 1.5620 - pearson_correlation: 0.0356 480/1420 [=========>....................] - ETA: 10s - loss: 1.5568 - pearson_correlation: 0.0510 512/1420 [=========>....................] - ETA: 9s - loss: 1.5516 - pearson_correlation: 0.0457 544/1420 [==========>...................] - ETA: 8s - loss: 1.5284 - pearson_correlation: 0.0527 576/1420 [===========>..................] - ETA: 7s - loss: 1.5253 - pearson_correlation: 0.0653 608/1420 [===========>..................] - ETA: 7s - loss: 1.5428 - pearson_correlation: 0.0733 640/1420 [============>.................] - ETA: 6s - loss: 1.5453 - pearson_correlation: 0.0864 672/1420 [=============>................] - ETA: 6s - loss: 1.5283 - pearson_correlation: 0.0760 704/1420 [=============>................] - ETA: 5s - loss: 1.5373 - pearson_correlation: 0.0820 736/1420 [==============>...............] - ETA: 5s - loss: 1.5389 - pearson_correlation: 0.0893 768/1420 [===============>..............] - ETA: 4s - loss: 1.5436 - pearson_correlation: 0.0845 800/1420 [===============>..............] - ETA: 4s - loss: 1.5527 - pearson_correlation: 0.1007 832/1420 [================>.............] - ETA: 4s - loss: 1.5406 - pearson_correlation: 0.1014 864/1420 [=================>............] - ETA: 3s - loss: 1.5535 - pearson_correlation: 0.1154 896/1420 [=================>............] - ETA: 3s - loss: 1.5523 - pearson_correlation: 0.1191 928/1420 [==================>...........] - ETA: 3s - loss: 1.5507 - pearson_correlation: 0.1134 960/1420 [===================>..........] - ETA: 2s - loss: 1.5499 - pearson_correlation: 0.1043 992/1420 [===================>..........] - ETA: 2s - loss: 1.5532 - pearson_correlation: 0.1124 1024/1420 [====================>.........] - ETA: 2s - loss: 1.5542 - pearson_correlation: 0.1121 1056/1420 [=====================>........] - ETA: 2s - loss: 1.5563 - pearson_correlation: 0.1136 1088/1420 [=====================>........] - ETA: 1s - loss: 1.5599 - pearson_correlation: 0.1175 1120/1420 [======================>.......] - ETA: 1s - loss: 1.5590 - pearson_correlation: 0.1220 1152/1420 [=======================>......] - ETA: 1s - loss: 1.5607 - pearson_correlation: 0.1344 1184/1420 [========================>.....] - ETA: 1s - loss: 1.5574 - pearson_correlation: 0.1370 1216/1420 [========================>.....] - ETA: 1s - loss: 1.5674 - pearson_correlation: 0.1420 1248/1420 [=========================>....] - ETA: 0s - loss: 1.5722 - pearson_correlation: 0.1395 1280/1420 [==========================>...] - ETA: 0s - loss: 1.5761 - pearson_correlation: 0.1397 1312/1420 [==========================>...] - ETA: 0s - loss: 1.5667 - pearson_correlation: 0.1348 1344/1420 [===========================>..] - ETA: 0s - loss: 1.5637 - pearson_correlation: 0.1366 1376/1420 [============================>.] - ETA: 0s - loss: 1.5638 - pearson_correlation: 0.1322 1408/1420 [============================>.] - ETA: 0s - loss: 1.5608 - pearson_correlation: 0.1269 1420/1420 [==============================] - 7s 5ms/sample - loss: 1.5630 - pearson_correlation: 0.1196 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 48.23 3.04 23.20 |
ttgsea.Rcheck/examples_i386/ttgsea-Ex.timings
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ttgsea.Rcheck/examples_x64/ttgsea-Ex.timings
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