Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:06:57 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the ttgsea package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ttgsea.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1973/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
ttgsea 1.0.0 (landing page) Dongmin Jung
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: ttgsea |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ttgsea.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ttgsea_1.0.0.tar.gz |
StartedAt: 2021-10-15 01:00:29 -0400 (Fri, 15 Oct 2021) |
EndedAt: 2021-10-15 01:03:28 -0400 (Fri, 15 Oct 2021) |
EllapsedTime: 179.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ttgsea.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ttgsea.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ttgsea_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/ttgsea.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ttgsea/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ttgsea’ version ‘1.0.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ttgsea’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed predict_model 32.942 9.001 20.517 fit_model 33.032 7.418 22.100 token_vector 12.815 0.839 6.842 text_token 12.566 0.515 6.481 bi_gru 6.163 0.981 7.290 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ttgsea.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ttgsea ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘ttgsea’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ttgsea)
ttgsea.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(ttgsea) Loading required package: keras > > test_check("ttgsea") 2021-10-15 01:03:05.743309: I tensorflow/compiler/xla/service/service.cc:168] XLA service 0x7fd51e724c70 initialized for platform Host (this does not guarantee that XLA will be used). Devices: 2021-10-15 01:03:05.743363: I tensorflow/compiler/xla/service/service.cc:176] StreamExecutor device (0): Host, Default Version 1/45 [..............................] - ETA: 0s - loss: 1.8396 - pearson_correlation: -0.1671 2/45 [>.............................] - ETA: 1s - loss: 1.5448 - pearson_correlation: -0.0444 3/45 [=>............................] - ETA: 1s - loss: 1.6076 - pearson_correlation: -0.1222 4/45 [=>............................] - ETA: 2s - loss: 1.6501 - pearson_correlation: -0.0878 5/45 [==>...........................] - ETA: 2s - loss: 1.6323 - pearson_correlation: -0.0174 6/45 [===>..........................] - ETA: 2s - loss: 1.5794 - pearson_correlation: 0.0520 7/45 [===>..........................] - ETA: 2s - loss: 1.5982 - pearson_correlation: 0.0732 8/45 [====>.........................] - ETA: 2s - loss: 1.5932 - pearson_correlation: 0.1149 9/45 [=====>........................] - ETA: 2s - loss: 1.5561 - pearson_correlation: 0.0722 10/45 [=====>........................] - ETA: 2s - loss: 1.5732 - pearson_correlation: 0.0922 11/45 [======>.......................] - ETA: 2s - loss: 1.5657 - pearson_correlation: 0.0952 12/45 [=======>......................] - ETA: 2s - loss: 1.5964 - pearson_correlation: 0.1034 13/45 [=======>......................] - ETA: 2s - loss: 1.6039 - pearson_correlation: 0.0915 14/45 [========>.....................] - ETA: 1s - loss: 1.6102 - pearson_correlation: 0.1005 15/45 [=========>....................] - ETA: 1s - loss: 1.5897 - pearson_correlation: 0.0848 16/45 [=========>....................] - ETA: 1s - loss: 1.6002 - pearson_correlation: 0.0846 17/45 [==========>...................] - ETA: 1s - loss: 1.6058 - pearson_correlation: 0.0938 18/45 [===========>..................] - ETA: 1s - loss: 1.6050 - pearson_correlation: 0.0935 19/45 [===========>..................] - ETA: 1s - loss: 1.6041 - pearson_correlation: 0.1032 20/45 [============>.................] - ETA: 1s - loss: 1.6055 - pearson_correlation: 0.0859 21/45 [=============>................] - ETA: 1s - loss: 1.6102 - pearson_correlation: 0.0828 22/45 [=============>................] - ETA: 1s - loss: 1.6201 - pearson_correlation: 0.0882 23/45 [==============>...............] - ETA: 1s - loss: 1.6116 - pearson_correlation: 0.0929 24/45 [===============>..............] - ETA: 1s - loss: 1.6003 - pearson_correlation: 0.1043 25/45 [===============>..............] - ETA: 1s - loss: 1.6165 - pearson_correlation: 0.1121 26/45 [================>.............] - ETA: 1s - loss: 1.6135 - pearson_correlation: 0.1045 27/45 [=================>............] - ETA: 1s - loss: 1.6121 - pearson_correlation: 0.1108 28/45 [=================>............] - ETA: 1s - loss: 1.6053 - pearson_correlation: 0.1222 29/45 [==================>...........] - ETA: 1s - loss: 1.6041 - pearson_correlation: 0.1309 30/45 [===================>..........] - ETA: 0s - loss: 1.6027 - pearson_correlation: 0.1337 31/45 [===================>..........] - ETA: 0s - loss: 1.5960 - pearson_correlation: 0.1281 32/45 [====================>.........] - ETA: 0s - loss: 1.5910 - pearson_correlation: 0.1248 33/45 [=====================>........] - ETA: 0s - loss: 1.5899 - pearson_correlation: 0.1145 34/45 [=====================>........] - ETA: 0s - loss: 1.5907 - pearson_correlation: 0.1138 35/45 [======================>.......] - ETA: 0s - loss: 1.5923 - pearson_correlation: 0.1099 36/45 [=======================>......] - ETA: 0s - loss: 1.5879 - pearson_correlation: 0.1117 37/45 [=======================>......] - ETA: 0s - loss: 1.5870 - pearson_correlation: 0.1096 38/45 [========================>.....] - ETA: 0s - loss: 1.5922 - pearson_correlation: 0.1117 39/45 [=========================>....] - ETA: 0s - loss: 1.5953 - pearson_correlation: 0.1123 40/45 [=========================>....] - ETA: 0s - loss: 1.5929 - pearson_correlation: 0.1092 42/45 [===========================>..] - ETA: 0s - loss: 1.5791 - pearson_correlation: 0.1064 43/45 [===========================>..] - ETA: 0s - loss: 1.5760 - pearson_correlation: 0.1087 45/45 [==============================] - ETA: 0s - loss: 1.5683 - pearson_correlation: 0.1209 45/45 [==============================] - 3s 62ms/step - loss: 1.5683 - pearson_correlation: 0.1209 [ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 37.898 12.182 29.498
ttgsea.Rcheck/ttgsea-Ex.timings
name | user | system | elapsed | |
bi_gru | 6.163 | 0.981 | 7.290 | |
bi_lstm | 0.469 | 0.016 | 0.483 | |
fit_model | 33.032 | 7.418 | 22.100 | |
metric_pearson_correlation | 0.036 | 0.001 | 0.038 | |
plot_model | 0.343 | 0.031 | 0.372 | |
predict_model | 32.942 | 9.001 | 20.517 | |
sampling_generator | 0.026 | 0.001 | 0.026 | |
text_token | 12.566 | 0.515 | 6.481 | |
token_vector | 12.815 | 0.839 | 6.842 | |