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This page was generated on 2021-10-15 15:05:58 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the bayNorm package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bayNorm.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 129/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
bayNorm 1.10.0 (landing page) Wenhao Tang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: bayNorm |
Version: 1.10.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/bayNorm_1.10.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.10.0.zip && rm bayNorm_1.10.0.tar.gz bayNorm_1.10.0.zip |
StartedAt: 2021-10-14 08:56:58 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 08:58:26 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 88.1 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/bayNorm_1.10.0.tar.gz && rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.10.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL bayNorm_1.10.0.zip && rm bayNorm_1.10.0.tar.gz bayNorm_1.10.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 4 1332k 4 63475 0 0 344k 0 0:00:03 --:--:-- 0:00:03 344k 100 1332k 100 1332k 0 0 1446k 0 --:--:-- --:--:-- --:--:-- 1448k install for i386 * installing *source* package 'bayNorm' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppProgress/include' -I"c:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw32/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppProgress/include' -I"c:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayNorm_main.cpp -o bayNorm_main.o bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)': bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)': bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/bayNorm.buildbin-libdir/00LOCK-bayNorm/00new/bayNorm/libs/i386 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bayNorm' finding HTML links ... done AdjustSIZE_fun html BB_Fun html BetaFun html Check_input html DownSampling html EXAMPLE_DATA_list html EstPrior html EstPrior_rcpp html EstPrior_sprcpp html NOISY_FUN html Prior_fun html SyntheticControl html asMatrix html as_matrix html bayNorm html bayNorm_sup html noisy_gene_detection html t_sp html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'bayNorm' ... ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1 -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppProgress/include' -I"C:/extsoft/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayNorm_main.cpp -o bayNorm_main.o bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)': bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)': bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable] int Nrows; ^~~~~ C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/bayNorm.buildbin-libdir/bayNorm/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'bayNorm' as bayNorm_1.10.0.zip * DONE (bayNorm) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'bayNorm' successfully unpacked and MD5 sums checked