##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf bayNorm.buildbin-libdir && mkdir bayNorm.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bayNorm.buildbin-libdir bayNorm_1.10.0.tar.gz
###
##############################################################################
##############################################################################



install for i386

* installing *source* package 'bayNorm' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppProgress/include'   -I"c:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppProgress/include'   -I"c:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bayNorm_main.cpp -o bayNorm_main.o
bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)':
bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable]
   int Nrows;
       ^~~~~
bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)':
bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable]
   int Nrows;
       ^~~~~
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/bayNorm.buildbin-libdir/00LOCK-bayNorm/00new/bayNorm/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bayNorm'
    finding HTML links ... done
    AdjustSIZE_fun                          html  
    BB_Fun                                  html  
    BetaFun                                 html  
    Check_input                             html  
    DownSampling                            html  
    EXAMPLE_DATA_list                       html  
    EstPrior                                html  
    EstPrior_rcpp                           html  
    EstPrior_sprcpp                         html  
    NOISY_FUN                               html  
    Prior_fun                               html  
    SyntheticControl                        html  
    asMatrix                                html  
    as_matrix                               html  
    bayNorm                                 html  
    bayNorm_sup                             html  
    noisy_gene_detection                    html  
    t_sp                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'bayNorm' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -DARMA_64BIT_WORD=1  -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/Rcpp/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppArmadillo/include' -I'C:/Users/biocbuild/bbs-3.13-bioc/R/library/RcppProgress/include'   -I"C:/extsoft/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c bayNorm_main.cpp -o bayNorm_main.o
bayNorm_main.cpp: In function 'Rcpp::List EstPrior_sprcpp(arma::sp_mat)':
bayNorm_main.cpp:1374:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable]
   int Nrows;
       ^~~~~
bayNorm_main.cpp: In function 'Rcpp::List EstPrior_rcpp(Rcpp::NumericMatrix)':
bayNorm_main.cpp:1427:7: warning: variable 'Nrows' set but not used [-Wunused-but-set-variable]
   int Nrows;
       ^~~~~
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o bayNorm.dll tmp.def RcppExports.o bayNorm_main.o -fopenmp -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRlapack -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/bayNorm.buildbin-libdir/bayNorm/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bayNorm' as bayNorm_1.10.0.zip
* DONE (bayNorm)