| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:22 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the SELEX package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SELEX.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1726/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SELEX 1.24.0 (landing page) Harmen J. Bussemaker
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: SELEX |
| Version: 1.24.0 |
| Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:SELEX.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings SELEX_1.24.0.tar.gz |
| StartedAt: 2021-10-15 05:27:14 -0400 (Fri, 15 Oct 2021) |
| EndedAt: 2021-10-15 05:29:23 -0400 (Fri, 15 Oct 2021) |
| EllapsedTime: 129.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SELEX.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD check --no-multiarch --install=check:SELEX.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings SELEX_1.24.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/SELEX.Rcheck'
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SELEX/DESCRIPTION' ... OK
* this is package 'SELEX' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
.BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'SELEX' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking include directives in Makefiles ... OK
* checking files in 'vignettes' ... NOTE
The following directory looks like a leftover from 'knitr':
'cache'
Please remove from your package.
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
SELEX 30.81 4.24 12.57
selex.seqfilter 13.49 1.56 4.67
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.13-bioc/meat/SELEX.Rcheck/00check.log'
for details.
SELEX.Rcheck/00install.out
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###
### Running command:
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### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch SELEX
###
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* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
* installing *source* package 'SELEX' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'SELEX'
finding HTML links ... done
SELEX html
REDIRECT:topic Previous alias or file overwritten by alias: C:/Users/biocbuild/bbs-3.13-bioc/R/library/00LOCK-SELEX/00new/SELEX/help/selex.html
selex.affinities html
selex.config html
selex.countSummary html
selex.counts html
selex.defineSample html
selex.exampledata html
selex.fastqPSFM html
selex.getAttributes html
selex.getRound0 html
selex.getSeqfilter html
selex.infogain html
selex.infogainSummary html
selex.jvmStatus html
selex.kmax html
selex.kmerPSFM html
selex.loadAnnotation html
selex.mm html
selex.mmProb html
selex.mmSummary html
selex.revcomp html
selex.run html
selex.sample html
selex.samplePSFM html
selex.sampleSummary html
selex.saveAnnotation html
selex.seqfilter html
selex.setwd html
selex.split html
selex.summary html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SELEX)
Making 'packages.html' ... done
SELEX.Rcheck/SELEX-Ex.timings
| name | user | system | elapsed | |
| SELEX | 30.81 | 4.24 | 12.57 | |
| selex.affinities | 0.91 | 0.01 | 0.48 | |
| selex.config | 0.15 | 0.00 | 0.04 | |
| selex.countSummary | 1.33 | 0.05 | 0.52 | |
| selex.counts | 1.45 | 0.03 | 0.73 | |
| selex.defineSample | 0.07 | 0.00 | 0.05 | |
| selex.exampledata | 0.07 | 0.02 | 0.03 | |
| selex.fastqPSFM | 0.60 | 0.01 | 0.31 | |
| selex.getAttributes | 0.12 | 0.00 | 0.05 | |
| selex.getRound0 | 0.36 | 0.02 | 0.13 | |
| selex.getSeqfilter | 0.24 | 0.00 | 0.03 | |
| selex.infogain | 2.11 | 0.03 | 0.43 | |
| selex.infogainSummary | 0.87 | 0.06 | 0.33 | |
| selex.jvmStatus | 0.13 | 0.00 | 0.05 | |
| selex.kmax | 1.20 | 0.55 | 1.19 | |
| selex.kmerPSFM | 0.47 | 0.09 | 0.33 | |
| selex.loadAnnotation | 0.28 | 0.00 | 0.14 | |
| selex.mm | 0.69 | 0.02 | 0.31 | |
| selex.mmProb | 0.40 | 0.03 | 0.20 | |
| selex.mmSummary | 0.46 | 0.03 | 0.24 | |
| selex.revcomp | 0.71 | 0.01 | 0.40 | |
| selex.run | 1.36 | 0.03 | 0.42 | |
| selex.sample | 0.14 | 0.02 | 0.08 | |
| selex.samplePSFM | 0.91 | 0.03 | 0.33 | |
| selex.sampleSummary | 0.34 | 0.00 | 0.14 | |
| selex.saveAnnotation | 0.12 | 0.00 | 0.06 | |
| selex.seqfilter | 13.49 | 1.56 | 4.67 | |
| selex.setwd | 0.06 | 0.00 | 0.03 | |
| selex.split | 0.47 | 0.00 | 0.22 | |
| selex.summary | 1.05 | 0.06 | 0.70 | |