Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:52 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the SELEX package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SELEX.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1726/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
SELEX 1.24.0 (landing page) Harmen J. Bussemaker
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: SELEX |
Version: 1.24.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SELEX_1.24.0.tar.gz |
StartedAt: 2021-10-14 23:51:31 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 23:53:45 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 134.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: SELEX.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:SELEX.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings SELEX_1.24.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.13-bioc/meat/SELEX.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘SELEX/DESCRIPTION’ ... OK * this is package ‘SELEX’ version ‘1.24.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... NOTE Found the following hidden files and directories: .BBSoptions .git_fetch_output.txt .git_merge_output.txt These were most likely included in error. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SELEX’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in Makefiles ... OK * checking for GNU extensions in Makefiles ... OK * checking include directives in Makefiles ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed SELEX 29.086 3.002 10.714 selex.seqfilter 10.639 1.763 4.983 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.13-bioc/meat/SELEX.Rcheck/00check.log’ for details.
SELEX.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL SELEX ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’ * installing *source* package ‘SELEX’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SELEX)
SELEX.Rcheck/SELEX-Ex.timings
name | user | system | elapsed | |
SELEX | 29.086 | 3.002 | 10.714 | |
selex.affinities | 0.934 | 0.043 | 0.457 | |
selex.config | 0.164 | 0.005 | 0.048 | |
selex.countSummary | 1.260 | 0.038 | 0.434 | |
selex.counts | 1.394 | 0.078 | 0.706 | |
selex.defineSample | 0.090 | 0.010 | 0.055 | |
selex.exampledata | 0.067 | 0.010 | 0.046 | |
selex.fastqPSFM | 0.621 | 0.031 | 0.342 | |
selex.getAttributes | 0.295 | 0.016 | 0.097 | |
selex.getRound0 | 0.278 | 0.014 | 0.150 | |
selex.getSeqfilter | 0.101 | 0.003 | 0.049 | |
selex.infogain | 1.975 | 0.066 | 0.612 | |
selex.infogainSummary | 1.250 | 0.033 | 0.354 | |
selex.jvmStatus | 0.064 | 0.004 | 0.040 | |
selex.kmax | 1.345 | 0.313 | 1.017 | |
selex.kmerPSFM | 0.382 | 0.061 | 0.298 | |
selex.loadAnnotation | 0.389 | 0.015 | 0.151 | |
selex.mm | 0.847 | 0.034 | 0.320 | |
selex.mmProb | 0.796 | 0.044 | 0.271 | |
selex.mmSummary | 0.846 | 0.043 | 0.329 | |
selex.revcomp | 1.224 | 0.052 | 0.558 | |
selex.run | 2.099 | 0.072 | 0.712 | |
selex.sample | 0.252 | 0.012 | 0.120 | |
selex.samplePSFM | 1.018 | 0.033 | 0.364 | |
selex.sampleSummary | 0.172 | 0.012 | 0.107 | |
selex.saveAnnotation | 0.056 | 0.010 | 0.067 | |
selex.seqfilter | 10.639 | 1.763 | 4.983 | |
selex.setwd | 0.093 | 0.003 | 0.037 | |
selex.split | 0.552 | 0.037 | 0.225 | |
selex.summary | 1.698 | 0.086 | 0.765 | |