Thomas Carroll
| Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021) |
| git_url: https://git.bioconductor.org/packages/Herper |
| git_branch: RELEASE_3_13 |
| git_last_commit: 98047e8 |
| git_last_commit_date: 2021-05-19 12:56:53 -0400 (Wed, 19 May 2021) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-10-15 15:05:42 -0400 (Fri, 15 Oct 2021).
|
To the developers/maintainers of the Herper package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Herper.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 852/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Herper 1.2.0 (landing page) Thomas Carroll
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | TIMEOUT | skipped | skipped | |||||||||
| Package: Herper |
| Version: 1.2.0 |
| Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:Herper.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings Herper_1.2.0.tar.gz |
| StartedAt: 2021-10-14 10:09:46 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 10:31:41 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 1314.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Herper.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:Herper.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings Herper_1.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/Herper.Rcheck’
* using R version 4.1.1 (2021-08-10)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Herper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Herper’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Herper’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
UseEnvironments 716.486 11.351 731.919
ListCondaEnvironments 149.383 15.484 167.421
install_CondaSysReqs 134.277 9.281 143.675
install_CondaTools 26.897 3.588 30.512
ListCondaPackages 13.351 2.718 15.698
SaveEnvironments 14.287 1.706 15.759
search_conda 11.453 1.355 12.464
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
Herper.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL Herper ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘Herper’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Herper)
Herper.Rcheck/tests/testthat.Rout
R version 4.1.1 (2021-08-10) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(Herper)
Loading required package: reticulate
>
> test_check("Herper")
trying URL 'https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh'
Content type 'application/x-sh' length 66709754 bytes (63.6 MB)
==================================================
downloaded 63.6 MB
PREFIX=/tmp/Rtmp6JIGgy/Test
Unpacking payload ...
0%| | 0/38 [00:00<?, ?it/s]
Extracting : libffi-3.3-he6710b0_2.conda: 0%| | 0/38 [00:00<?, ?it/s]
Extracting : libffi-3.3-he6710b0_2.conda: 3%|▎ | 1/38 [00:00<00:12, 3.02it/s]
Extracting : cffi-1.14.6-py39h400218f_0.conda: 3%|▎ | 1/38 [00:00<00:12, 3.02it/s]
Extracting : brotlipy-0.7.0-py39h27cfd23_1003.conda: 5%|▌ | 2/38 [00:00<00:11, 3.02it/s]
Extracting : tzdata-2021a-h52ac0ba_0.conda: 8%|▊ | 3/38 [00:00<00:11, 3.02it/s]
Extracting : libstdcxx-ng-9.3.0-hd4cf53a_17.conda: 11%|█ | 4/38 [00:00<00:11, 3.02it/s]
Extracting : ld_impl_linux-64-2.35.1-h7274673_9.conda: 13%|█▎ | 5/38 [00:00<00:10, 3.02it/s]
Extracting : ld_impl_linux-64-2.35.1-h7274673_9.conda: 16%|█▌ | 6/38 [00:00<00:07, 4.19it/s]
Extracting : pysocks-1.7.1-py39h06a4308_0.conda: 16%|█▌ | 6/38 [00:00<00:07, 4.19it/s]
Extracting : conda-package-handling-1.7.3-py39h27cfd23_1.conda: 18%|█▊ | 7/38 [00:00<00:07, 4.19it/s]
Extracting : urllib3-1.26.6-pyhd3eb1b0_1.conda: 21%|██ | 8/38 [00:00<00:07, 4.19it/s]
Extracting : ruamel_yaml-0.15.100-py39h27cfd23_0.conda: 24%|██▎ | 9/38 [00:00<00:06, 4.19it/s]
Extracting : ncurses-6.2-he6710b0_1.conda: 26%|██▋ | 10/38 [00:00<00:06, 4.19it/s]
Extracting : tqdm-4.61.2-pyhd3eb1b0_1.conda: 29%|██▉ | 11/38 [00:00<00:06, 4.19it/s]
Extracting : wheel-0.36.2-pyhd3eb1b0_0.conda: 32%|███▏ | 12/38 [00:00<00:06, 4.19it/s]
Extracting : chardet-4.0.0-py39h06a4308_1003.conda: 34%|███▍ | 13/38 [00:00<00:05, 4.19it/s]
Extracting : pip-21.1.3-py39h06a4308_0.conda: 37%|███▋ | 14/38 [00:00<00:05, 4.19it/s]
Extracting : pycosat-0.6.3-py39h27cfd23_0.conda: 39%|███▉ | 15/38 [00:00<00:05, 4.19it/s]
Extracting : tk-8.6.10-hbc83047_0.conda: 42%|████▏ | 16/38 [00:00<00:05, 4.19it/s]
Extracting : pycparser-2.20-py_2.conda: 45%|████▍ | 17/38 [00:00<00:05, 4.19it/s]
Extracting : pyopenssl-20.0.1-pyhd3eb1b0_1.conda: 47%|████▋ | 18/38 [00:00<00:04, 4.19it/s]
Extracting : libgomp-9.3.0-h5101ec6_17.conda: 50%|█████ | 19/38 [00:00<00:04, 4.19it/s]
Extracting : six-1.16.0-pyhd3eb1b0_0.conda: 53%|█████▎ | 20/38 [00:00<00:04, 4.19it/s]
Extracting : cryptography-3.4.7-py39hd23ed53_0.conda: 55%|█████▌ | 21/38 [00:00<00:04, 4.19it/s]
Extracting : certifi-2021.5.30-py39h06a4308_0.conda: 58%|█████▊ | 22/38 [00:00<00:03, 4.19it/s]
Extracting : ca-certificates-2021.7.5-h06a4308_1.conda: 61%|██████ | 23/38 [00:00<00:03, 4.19it/s]
Extracting : openssl-1.1.1k-h27cfd23_0.conda: 63%|██████▎ | 24/38 [00:00<00:03, 4.19it/s]
Extracting : xz-5.2.5-h7b6447c_0.conda: 66%|██████▌ | 25/38 [00:00<00:03, 4.19it/s]
Extracting : _libgcc_mutex-0.1-main.conda: 68%|██████▊ | 26/38 [00:00<00:02, 4.19it/s]
Extracting : yaml-0.2.5-h7b6447c_0.conda: 71%|███████ | 27/38 [00:00<00:02, 4.19it/s]
Extracting : requests-2.25.1-pyhd3eb1b0_0.conda: 74%|███████▎ | 28/38 [00:00<00:02, 4.19it/s]
Extracting : zlib-1.2.11-h7b6447c_3.conda: 76%|███████▋ | 29/38 [00:00<00:02, 4.19it/s]
Extracting : sqlite-3.36.0-hc218d9a_0.conda: 79%|███████▉ | 30/38 [00:00<00:01, 4.19it/s]
Extracting : libgcc-ng-9.3.0-h5101ec6_17.conda: 82%|████████▏ | 31/38 [00:00<00:01, 4.19it/s]
Extracting : readline-8.1-h27cfd23_0.conda: 84%|████████▍ | 32/38 [00:00<00:01, 4.19it/s]
Extracting : setuptools-52.0.0-py39h06a4308_0.conda: 87%|████████▋ | 33/38 [00:00<00:01, 4.19it/s]
Extracting : _openmp_mutex-4.5-1_gnu.tar.bz2: 89%|████████▉ | 34/38 [00:00<00:00, 4.19it/s]
Extracting : idna-2.10-pyhd3eb1b0_0.tar.bz2: 92%|█████████▏| 35/38 [00:00<00:00, 4.19it/s]
Extracting : python-3.9.5-h12debd9_4.tar.bz2: 95%|█████████▍| 36/38 [00:04<00:00, 4.19it/s]
Extracting : python-3.9.5-h12debd9_4.tar.bz2: 97%|█████████▋| 37/38 [00:04<00:00, 4.90it/s]
Extracting : conda-4.10.3-py39h06a4308_0.tar.bz2: 97%|█████████▋| 37/38 [00:04<00:00, 4.90it/s]
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/Rtmp6JIGgy/Test
added / updated specs:
- _libgcc_mutex==0.1=main
- _openmp_mutex==4.5=1_gnu
- brotlipy==0.7.0=py39h27cfd23_1003
- ca-certificates==2021.7.5=h06a4308_1
- certifi==2021.5.30=py39h06a4308_0
- cffi==1.14.6=py39h400218f_0
- chardet==4.0.0=py39h06a4308_1003
- conda-package-handling==1.7.3=py39h27cfd23_1
- conda==4.10.3=py39h06a4308_0
- cryptography==3.4.7=py39hd23ed53_0
- idna==2.10=pyhd3eb1b0_0
- ld_impl_linux-64==2.35.1=h7274673_9
- libffi==3.3=he6710b0_2
- libgcc-ng==9.3.0=h5101ec6_17
- libgomp==9.3.0=h5101ec6_17
- libstdcxx-ng==9.3.0=hd4cf53a_17
- ncurses==6.2=he6710b0_1
- openssl==1.1.1k=h27cfd23_0
- pip==21.1.3=py39h06a4308_0
- pycosat==0.6.3=py39h27cfd23_0
- pycparser==2.20=py_2
- pyopenssl==20.0.1=pyhd3eb1b0_1
- pysocks==1.7.1=py39h06a4308_0
- python==3.9.5=h12debd9_4
- readline==8.1=h27cfd23_0
- requests==2.25.1=pyhd3eb1b0_0
- ruamel_yaml==0.15.100=py39h27cfd23_0
- setuptools==52.0.0=py39h06a4308_0
- six==1.16.0=pyhd3eb1b0_0
- sqlite==3.36.0=hc218d9a_0
- tk==8.6.10=hbc83047_0
- tqdm==4.61.2=pyhd3eb1b0_1
- tzdata==2021a=h52ac0ba_0
- urllib3==1.26.6=pyhd3eb1b0_1
- wheel==0.36.2=pyhd3eb1b0_0
- xz==5.2.5=h7b6447c_0
- yaml==0.2.5=h7b6447c_0
- zlib==1.2.11=h7b6447c_3
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
_openmp_mutex pkgs/main/linux-64::_openmp_mutex-4.5-1_gnu
brotlipy pkgs/main/linux-64::brotlipy-0.7.0-py39h27cfd23_1003
ca-certificates pkgs/main/linux-64::ca-certificates-2021.7.5-h06a4308_1
certifi pkgs/main/linux-64::certifi-2021.5.30-py39h06a4308_0
cffi pkgs/main/linux-64::cffi-1.14.6-py39h400218f_0
chardet pkgs/main/linux-64::chardet-4.0.0-py39h06a4308_1003
conda pkgs/main/linux-64::conda-4.10.3-py39h06a4308_0
conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.7.3-py39h27cfd23_1
cryptography pkgs/main/linux-64::cryptography-3.4.7-py39hd23ed53_0
idna pkgs/main/noarch::idna-2.10-pyhd3eb1b0_0
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.35.1-h7274673_9
libffi pkgs/main/linux-64::libffi-3.3-he6710b0_2
libgcc-ng pkgs/main/linux-64::libgcc-ng-9.3.0-h5101ec6_17
libgomp pkgs/main/linux-64::libgomp-9.3.0-h5101ec6_17
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.3.0-hd4cf53a_17
ncurses pkgs/main/linux-64::ncurses-6.2-he6710b0_1
openssl pkgs/main/linux-64::openssl-1.1.1k-h27cfd23_0
pip pkgs/main/linux-64::pip-21.1.3-py39h06a4308_0
pycosat pkgs/main/linux-64::pycosat-0.6.3-py39h27cfd23_0
pycparser pkgs/main/noarch::pycparser-2.20-py_2
pyopenssl pkgs/main/noarch::pyopenssl-20.0.1-pyhd3eb1b0_1
pysocks pkgs/main/linux-64::pysocks-1.7.1-py39h06a4308_0
python pkgs/main/linux-64::python-3.9.5-h12debd9_4
readline pkgs/main/linux-64::readline-8.1-h27cfd23_0
requests pkgs/main/noarch::requests-2.25.1-pyhd3eb1b0_0
ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.100-py39h27cfd23_0
setuptools pkgs/main/linux-64::setuptools-52.0.0-py39h06a4308_0
six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_0
sqlite pkgs/main/linux-64::sqlite-3.36.0-hc218d9a_0
tk pkgs/main/linux-64::tk-8.6.10-hbc83047_0
tqdm pkgs/main/noarch::tqdm-4.61.2-pyhd3eb1b0_1
tzdata pkgs/main/noarch::tzdata-2021a-h52ac0ba_0
urllib3 pkgs/main/noarch::urllib3-1.26.6-pyhd3eb1b0_1
wheel pkgs/main/noarch::wheel-0.36.2-pyhd3eb1b0_0
xz pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
yaml pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3
Preparing transaction: ...working... done
Executing transaction: ...working... done
installation finished.
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/Rtmp6JIGgy/Test
added / updated specs:
- conda
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2021.9.30 | h06a4308_1 116 KB
certifi-2021.10.8 | py39h06a4308_0 151 KB
charset-normalizer-2.0.4 | pyhd3eb1b0_0 35 KB
cryptography-3.4.8 | py39hd23ed53_0 946 KB
idna-3.2 | pyhd3eb1b0_0 48 KB
openssl-1.1.1l | h7f8727e_0 2.5 MB
requests-2.26.0 | pyhd3eb1b0_0 59 KB
setuptools-58.0.4 | py39h06a4308_0 790 KB
tk-8.6.11 | h1ccaba5_0 3.0 MB
tqdm-4.62.2 | pyhd3eb1b0_1 96 KB
tzdata-2021a | h5d7bf9c_0 111 KB
urllib3-1.26.7 | pyhd3eb1b0_0 111 KB
------------------------------------------------------------
Total: 7.9 MB
The following NEW packages will be INSTALLED:
charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
The following packages will be REMOVED:
chardet-4.0.0-py39h06a4308_1003
pip-21.1.3-py39h06a4308_0
wheel-0.36.2-pyhd3eb1b0_0
The following packages will be UPDATED:
ca-certificates 2021.7.5-h06a4308_1 --> 2021.9.30-h06a4308_1
certifi 2021.5.30-py39h06a4308_0 --> 2021.10.8-py39h06a4308_0
cryptography 3.4.7-py39hd23ed53_0 --> 3.4.8-py39hd23ed53_0
idna 2.10-pyhd3eb1b0_0 --> 3.2-pyhd3eb1b0_0
openssl 1.1.1k-h27cfd23_0 --> 1.1.1l-h7f8727e_0
requests 2.25.1-pyhd3eb1b0_0 --> 2.26.0-pyhd3eb1b0_0
setuptools 52.0.0-py39h06a4308_0 --> 58.0.4-py39h06a4308_0
tk 8.6.10-hbc83047_0 --> 8.6.11-h1ccaba5_0
tqdm 4.61.2-pyhd3eb1b0_1 --> 4.62.2-pyhd3eb1b0_1
urllib3 1.26.6-pyhd3eb1b0_1 --> 1.26.7-pyhd3eb1b0_0
The following packages will be DOWNGRADED:
tzdata 2021a-h52ac0ba_0 --> 2021a-h5d7bf9c_0
Downloading and Extracting Packages
setuptools-58.0.4 | 790 KB | | 0%
setuptools-58.0.4 | 790 KB | ########## | 100%
setuptools-58.0.4 | 790 KB | ########## | 100%
requests-2.26.0 | 59 KB | | 0%
requests-2.26.0 | 59 KB | ########## | 100%
charset-normalizer-2 | 35 KB | | 0%
charset-normalizer-2 | 35 KB | ########## | 100%
urllib3-1.26.7 | 111 KB | | 0%
urllib3-1.26.7 | 111 KB | ########## | 100%
openssl-1.1.1l | 2.5 MB | | 0%
openssl-1.1.1l | 2.5 MB | ########## | 100%
openssl-1.1.1l | 2.5 MB | ########## | 100%
tqdm-4.62.2 | 96 KB | | 0%
tqdm-4.62.2 | 96 KB | ########## | 100%
tk-8.6.11 | 3.0 MB | | 0%
tk-8.6.11 | 3.0 MB | ########## | 100%
tk-8.6.11 | 3.0 MB | ########## | 100%
idna-3.2 | 48 KB | | 0%
idna-3.2 | 48 KB | ########## | 100%
tzdata-2021a | 111 KB | | 0%
tzdata-2021a | 111 KB | ########## | 100%
cryptography-3.4.8 | 946 KB | | 0%
cryptography-3.4.8 | 946 KB | ########## | 100%
certifi-2021.10.8 | 151 KB | | 0%
certifi-2021.10.8 | 151 KB | ########## | 100%
ca-certificates-2021 | 116 KB | | 0%
ca-certificates-2021 | 116 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /tmp/Rtmp6JIGgy/Test/envs/r-reticulate
added / updated specs:
- numpy
- python=3.6
The following packages will be downloaded:
package | build
---------------------------|-----------------
_libgcc_mutex-0.1 | conda_forge 3 KB conda-forge
_openmp_mutex-4.5 | 1_gnu 22 KB conda-forge
ca-certificates-2021.10.8 | ha878542_0 139 KB conda-forge
certifi-2016.9.26 | py36_0 217 KB conda-forge
ld_impl_linux-64-2.36.1 | hea4e1c9_2 667 KB conda-forge
libblas-3.9.0 |11_linux64_openblas 12 KB conda-forge
libcblas-3.9.0 |11_linux64_openblas 11 KB conda-forge
libffi-3.4.2 | h9c3ff4c_4 57 KB conda-forge
libgcc-ng-11.2.0 | h1d223b6_11 887 KB conda-forge
libgfortran-ng-11.2.0 | h69a702a_11 19 KB conda-forge
libgfortran5-11.2.0 | h5c6108e_11 1.7 MB conda-forge
libgomp-11.2.0 | h1d223b6_11 427 KB conda-forge
liblapack-3.9.0 |11_linux64_openblas 11 KB conda-forge
libopenblas-0.3.17 |pthreads_h8fe5266_1 9.2 MB conda-forge
libstdcxx-ng-11.2.0 | he4da1e4_11 4.2 MB conda-forge
libzlib-1.2.11 | h36c2ea0_1013 59 KB conda-forge
ncurses-6.2 | h58526e2_4 985 KB conda-forge
numpy-1.19.5 | py36hfc0c790_2 5.3 MB conda-forge
openssl-1.1.1l | h7f98852_0 2.1 MB conda-forge
pip-21.3 | pyhd8ed1ab_0 1.2 MB conda-forge
python-3.6.13 |hb7a2778_2_cpython 38.3 MB conda-forge
python_abi-3.6 | 2_cp36m 4 KB conda-forge
readline-8.1 | h46c0cb4_0 295 KB conda-forge
setuptools-49.6.0 | py36h5fab9bb_3 936 KB conda-forge
sqlite-3.36.0 | h9cd32fc_2 1.4 MB conda-forge
tk-8.6.11 | h27826a3_1 3.3 MB conda-forge
wheel-0.37.0 | pyhd8ed1ab_1 31 KB conda-forge
xz-5.2.5 | h516909a_1 343 KB conda-forge
zlib-1.2.11 | h36c2ea0_1013 86 KB conda-forge
------------------------------------------------------------
Total: 71.9 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
ca-certificates conda-forge/linux-64::ca-certificates-2021.10.8-ha878542_0
certifi conda-forge/linux-64::certifi-2016.9.26-py36_0
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2
libblas conda-forge/linux-64::libblas-3.9.0-11_linux64_openblas
libcblas conda-forge/linux-64::libcblas-3.9.0-11_linux64_openblas
libffi conda-forge/linux-64::libffi-3.4.2-h9c3ff4c_4
libgcc-ng conda-forge/linux-64::libgcc-ng-11.2.0-h1d223b6_11
libgfortran-ng conda-forge/linux-64::libgfortran-ng-11.2.0-h69a702a_11
libgfortran5 conda-forge/linux-64::libgfortran5-11.2.0-h5c6108e_11
libgomp conda-forge/linux-64::libgomp-11.2.0-h1d223b6_11
liblapack conda-forge/linux-64::liblapack-3.9.0-11_linux64_openblas
libopenblas conda-forge/linux-64::libopenblas-0.3.17-pthreads_h8fe5266_1
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-11.2.0-he4da1e4_11
libzlib conda-forge/linux-64::libzlib-1.2.11-h36c2ea0_1013
ncurses conda-forge/linux-64::ncurses-6.2-h58526e2_4
numpy conda-forge/linux-64::numpy-1.19.5-py36hfc0c790_2
openssl conda-forge/linux-64::openssl-1.1.1l-h7f98852_0
pip conda-forge/noarch::pip-21.3-pyhd8ed1ab_0
python conda-forge/linux-64::python-3.6.13-hb7a2778_2_cpython
python_abi conda-forge/linux-64::python_abi-3.6-2_cp36m
readline conda-forge/linux-64::readline-8.1-h46c0cb4_0
setuptools conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
sqlite conda-forge/linux-64::sqlite-3.36.0-h9cd32fc_2
tk conda-forge/linux-64::tk-8.6.11-h27826a3_1
wheel conda-forge/noarch::wheel-0.37.0-pyhd8ed1ab_1
xz conda-forge/linux-64::xz-5.2.5-h516909a_1
zlib conda-forge/linux-64::zlib-1.2.11-h36c2ea0_1013
Downloading and Extracting Packages
ca-certificates-2021 | 139 KB | | 0%
ca-certificates-2021 | 139 KB | ########## | 100%
liblapack-3.9.0 | 11 KB | | 0%
liblapack-3.9.0 | 11 KB | ########## | 100%
libstdcxx-ng-11.2.0 | 4.2 MB | | 0%
libstdcxx-ng-11.2.0 | 4.2 MB | ######2 | 63%
libstdcxx-ng-11.2.0 | 4.2 MB | ########## | 100%
ld_impl_linux-64-2.3 | 667 KB | | 0%
ld_impl_linux-64-2.3 | 667 KB | ########## | 100%
ld_impl_linux-64-2.3 | 667 KB | ########## | 100%
openssl-1.1.1l | 2.1 MB | | 0%
openssl-1.1.1l | 2.1 MB | ########## | 100%
openssl-1.1.1l | 2.1 MB | ########## | 100%
libgcc-ng-11.2.0 | 887 KB | | 0%
libgcc-ng-11.2.0 | 887 KB | ########## | 100%
libgcc-ng-11.2.0 | 887 KB | ########## | 100%
libzlib-1.2.11 | 59 KB | | 0%
libzlib-1.2.11 | 59 KB | ########## | 100%
libgomp-11.2.0 | 427 KB | | 0%
libgomp-11.2.0 | 427 KB | ########## | 100%
readline-8.1 | 295 KB | | 0%
readline-8.1 | 295 KB | ########## | 100%
sqlite-3.36.0 | 1.4 MB | | 0%
sqlite-3.36.0 | 1.4 MB | ########## | 100%
sqlite-3.36.0 | 1.4 MB | ########## | 100%
python_abi-3.6 | 4 KB | | 0%
python_abi-3.6 | 4 KB | ########## | 100%
libopenblas-0.3.17 | 9.2 MB | | 0%
libopenblas-0.3.17 | 9.2 MB | ###9 | 39%
libopenblas-0.3.17 | 9.2 MB | #########2 | 93%
libopenblas-0.3.17 | 9.2 MB | ########## | 100%
libblas-3.9.0 | 12 KB | | 0%
libblas-3.9.0 | 12 KB | ########## | 100%
libgfortran5-11.2.0 | 1.7 MB | | 0%
libgfortran5-11.2.0 | 1.7 MB | ########## | 100%
libgfortran5-11.2.0 | 1.7 MB | ########## | 100%
zlib-1.2.11 | 86 KB | | 0%
zlib-1.2.11 | 86 KB | ########## | 100%
pip-21.3 | 1.2 MB | | 0%
pip-21.3 | 1.2 MB | ########## | 100%
pip-21.3 | 1.2 MB | ########## | 100%
libcblas-3.9.0 | 11 KB | | 0%
libcblas-3.9.0 | 11 KB | ########## | 100%
wheel-0.37.0 | 31 KB | | 0%
wheel-0.37.0 | 31 KB | ########## | 100%
numpy-1.19.5 | 5.3 MB | | 0%
numpy-1.19.5 | 5.3 MB | ######2 | 63%
numpy-1.19.5 | 5.3 MB | ########## | 100%
tk-8.6.11 | 3.3 MB | | 0%
tk-8.6.11 | 3.3 MB | ########2 | 82%
tk-8.6.11 | 3.3 MB | ########## | 100%
xz-5.2.5 | 343 KB | | 0%
xz-5.2.5 | 343 KB | ########## | 100%
certifi-2016.9.26 | 217 KB | | 0%
certifi-2016.9.26 | 217 KB | ########## | 100%
libgfortran-ng-11.2. | 19 KB | | 0%
libgfortran-ng-11.2. | 19 KB | ########## | 100%
setuptools-49.6.0 | 936 KB | | 0%
setuptools-49.6.0 | 936 KB | ########## | 100%
setuptools-49.6.0 | 936 KB | ########## | 100%
ncurses-6.2 | 985 KB | | 0%
ncurses-6.2 | 985 KB | ########## | 100%
ncurses-6.2 | 985 KB | ########## | 100%
_openmp_mutex-4.5 | 22 KB | | 0%
_openmp_mutex-4.5 | 22 KB | ########## | 100%
python-3.6.13 | 38.3 MB | | 0%
python-3.6.13 | 38.3 MB | 9 | 9%
python-3.6.13 | 38.3 MB | ##2 | 22%
python-3.6.13 | 38.3 MB | ###5 | 35%
python-3.6.13 | 38.3 MB | ####7 | 47%
python-3.6.13 | 38.3 MB | #####9 | 59%
python-3.6.13 | 38.3 MB | ####### | 71%
python-3.6.13 | 38.3 MB | ########3 | 83%
python-3.6.13 | 38.3 MB | #########5 | 96%
python-3.6.13 | 38.3 MB | ########## | 100%
libffi-3.4.2 | 57 KB | | 0%
libffi-3.4.2 | 57 KB | ########## | 100%
_libgcc_mutex-0.1 | 3 KB | | 0%
_libgcc_mutex-0.1 | 3 KB | ########## | 100%
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
# $ conda activate r-reticulate
#
# To deactivate an active environment, use
#
# $ conda deactivate
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 3 ]
>
> proc.time()
user system elapsed
133.559 18.540 155.867
Herper.Rcheck/Herper-Ex.timings
| name | user | system | elapsed | |
| ListCondaEnvironments | 149.383 | 15.484 | 167.421 | |
| ListCondaPackages | 13.351 | 2.718 | 15.698 | |
| SaveEnvironments | 14.287 | 1.706 | 15.759 | |
| UseEnvironments | 716.486 | 11.351 | 731.919 | |
| install_CondaSysReqs | 134.277 | 9.281 | 143.675 | |
| install_CondaTools | 26.897 | 3.588 | 30.512 | |
| search_conda | 11.453 | 1.355 | 12.464 | |