| Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:05 -0400 (Fri, 15 Oct 2021).
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To the developers/maintainers of the GeneAnswers package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GeneAnswers.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 708/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| GeneAnswers 2.34.0 (landing page) Lei Huang
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | TIMEOUT | OK | |||||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | ERROR | OK | |||||||||
| Package: GeneAnswers |
| Version: 2.34.0 |
| Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneAnswers_2.34.0.tar.gz && rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAnswers.buildbin-libdir GeneAnswers_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneAnswers_2.34.0.zip && rm GeneAnswers_2.34.0.tar.gz GeneAnswers_2.34.0.zip |
| StartedAt: 2021-10-14 09:10:08 -0400 (Thu, 14 Oct 2021) |
| EndedAt: 2021-10-14 09:11:55 -0400 (Thu, 14 Oct 2021) |
| EllapsedTime: 106.9 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GeneAnswers_2.34.0.tar.gz && rm -rf GeneAnswers.buildbin-libdir && mkdir GeneAnswers.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GeneAnswers.buildbin-libdir GeneAnswers_2.34.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GeneAnswers_2.34.0.zip && rm GeneAnswers_2.34.0.tar.gz GeneAnswers_2.34.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
3 32.6M 3 1038k 0 0 1529k 0 0:00:21 --:--:-- 0:00:21 1529k
10 32.6M 10 3634k 0 0 2148k 0 0:00:15 0:00:01 0:00:14 2149k
21 32.6M 21 7062k 0 0 2643k 0 0:00:12 0:00:02 0:00:10 2644k
24 32.6M 24 8305k 0 0 2254k 0 0:00:14 0:00:03 0:00:11 2254k
24 32.6M 24 8341k 0 0 1782k 0 0:00:18 0:00:04 0:00:14 1781k
27 32.6M 27 9237k 0 0 1619k 0 0:00:20 0:00:05 0:00:15 1631k
35 32.6M 35 11.6M 0 0 1793k 0 0:00:18 0:00:06 0:00:12 1672k
46 32.6M 46 15.2M 0 0 2034k 0 0:00:16 0:00:07 0:00:09 1708k
59 32.6M 59 19.5M 0 0 2311k 0 0:00:14 0:00:08 0:00:06 2352k
75 32.6M 75 24.4M 0 0 2590k 0 0:00:12 0:00:09 0:00:03 3346k
91 32.6M 91 29.8M 0 0 2858k 0 0:00:11 0:00:10 0:00:01 4275k
100 32.6M 100 32.6M 0 0 3011k 0 0:00:11 0:00:11 --:--:-- 4849k
install for i386
* installing *source* package 'GeneAnswers' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
** help
*** installing help indices
converting help for package 'GeneAnswers'
finding HTML links ... done
DO html
DOLite html
DOLiteTerm html
DmIALite html
GeneAnswers-class html
GeneAnswers-package html
HsIALite html
MmIALite html
RnIALite html
buildNet html
caBIO.PATHGenes html
caBIO2entrez html
categoryNet html
chartPlots html
drawTable html
entrez2caBIO html
geneAnnotationHeatmap html
geneAnswersBuilder html
geneAnswersChartPlots html
geneAnswersConceptNet html
geneAnswersConceptRelation html
geneAnswersConcepts html
geneAnswersHeatmap html
geneAnswersHomoMapping html
geneAnswersReadable html
geneAnswersSort html
geneConceptNet html
getCategoryList html
getCategoryTerms html
getConceptTable html
getConnectedGraph html
getDOLiteTerms html
getGOList html
getHomoGeneIDs html
getListGIF html
getMultiLayerGraphIDs html
getNextGOIDs html
getPATHList html
getPATHTerms html
getREACTOMEPATHList html
getREACTOMEPATHTerms html
getSingleLayerGraphIDs html
getSymbols html
getTotalGeneNumber html
getcaBIOPATHList html
getcaBIOPATHTerms html
groupReport html
humanExpr html
humanGeneInput html
mouseExpr html
mouseGeneInput html
sampleGroupsData html
searchEntrez html
topCategory html
topCategoryGenes html
topDOLITE html
topDOLITEGenes html
topGO html
topGOGenes html
topPATH html
topPATHGenes html
topREACTOME.PATH html
topREACTOME.PATHGenes html
topcaBIO.PATH html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'GeneAnswers' ...
** testing if installed package can be loaded
Warning: replacing previous import 'stats::decompose' by 'igraph::decompose' when loading 'GeneAnswers'
Warning: replacing previous import 'stats::spectrum' by 'igraph::spectrum' when loading 'GeneAnswers'
* MD5 sums
packaged installation of 'GeneAnswers' as GeneAnswers_2.34.0.zip
* DONE (GeneAnswers)
* installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library'
package 'GeneAnswers' successfully unpacked and MD5 sums checked