Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:06 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the GENIE3 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GENIE3.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 732/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GENIE3 1.14.0 (landing page) Van Anh Huynh-Thu
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: GENIE3 |
Version: 1.14.0 |
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GENIE3_1.14.0.tar.gz && rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GENIE3_1.14.0.zip && rm GENIE3_1.14.0.tar.gz GENIE3_1.14.0.zip |
StartedAt: 2021-10-14 08:04:36 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 08:05:12 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 36.4 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/GENIE3_1.14.0.tar.gz && rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=GENIE3.buildbin-libdir GENIE3_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL GENIE3_1.14.0.zip && rm GENIE3_1.14.0.tar.gz GENIE3_1.14.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 23856 100 23856 0 0 200k 0 --:--:-- --:--:-- --:--:-- 202k install for i386 * installing *source* package 'GENIE3' ... ** using staged installation ** libs "C:/rtools40/mingw32/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"c:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c GENIE3.c -o GENIE3.o GENIE3.c: In function 'find_the_best_threshold_multiregr': GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold.f=best_threshold; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'build_one_tree_ensemble': GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized] write_one_tree(current_tree, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GENIE3.c: In function 'find_the_best_threshold_symb_multiregr': GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate': GENIE3.c:1762:10: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized] return flag_continue; ^~~~~~~~~~~~~ C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -Lc:/extsoft/lib/i386 -Lc:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/GENIE3.buildbin-libdir/00LOCK-GENIE3/00new/GENIE3/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading in method for 'GENIE3' with signature '"SummarizedExperiment"': no definition for class "SummarizedExperiment" in method for 'GENIE3' with signature '"ExpressionSet"': no definition for class "ExpressionSet" ** help *** installing help indices converting help for package 'GENIE3' finding HTML links ... done GENIE3 html getLinkList html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'GENIE3' ... ** libs "C:/rtools40/mingw64/bin/"gcc -I"C:/Users/BIOCBU~1/BBS-3~1.13-/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -c GENIE3.c -o GENIE3.o GENIE3.c: In function 'find_the_best_threshold_multiregr': GENIE3.c:1368:24: warning: 'best_threshold' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold.f=best_threshold; ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ GENIE3.c:1370:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'build_one_tree_ensemble': GENIE3.c:1052:7: warning: 'fp' may be used uninitialized in this function [-Wmaybe-uninitialized] write_one_tree(current_tree, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ GENIE3.c: In function 'find_the_best_threshold_symb_multiregr': GENIE3.c:1466:27: warning: 'best_info' may be used uninitialized in this function [-Wmaybe-uninitialized] current_threshold_info=best_info; ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ GENIE3.c: In function 'compute_ltrees_variable_importance_multiregr_separate': GENIE3.c:1762:10: warning: 'flag_continue' may be used uninitialized in this function [-Wmaybe-uninitialized] return flag_continue; ^~~~~~~~~~~~~ C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o GENIE3.dll tmp.def GENIE3.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.13-/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.13-bioc/meat/GENIE3.buildbin-libdir/GENIE3/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'GENIE3' as GENIE3_1.14.0.zip * DONE (GENIE3) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'GENIE3' successfully unpacked and MD5 sums checked