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This page was generated on 2021-10-15 15:06:37 -0400 (Fri, 15 Oct 2021).

BUILD BIN results for GENIE3 on machv2

To the developers/maintainers of the GENIE3 package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GENIE3.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 732/2041HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GENIE3 1.14.0  (landing page)
Van Anh Huynh-Thu
Snapshot Date: 2021-10-14 04:50:12 -0400 (Thu, 14 Oct 2021)
git_url: https://git.bioconductor.org/packages/GENIE3
git_branch: RELEASE_3_13
git_last_commit: a186e5b
git_last_commit_date: 2021-05-19 12:29:12 -0400 (Wed, 19 May 2021)
nebbiolo1Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
tokay2Windows Server 2012 R2 Standard / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
machv2macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: GENIE3
Version: 1.14.0
Command: rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GENIE3_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GENIE3.buildbin-libdir
StartedAt: 2021-10-15 02:32:35 -0400 (Fri, 15 Oct 2021)
EndedAt: 2021-10-15 02:33:39 -0400 (Fri, 15 Oct 2021)
EllapsedTime: 64.6 seconds
RetCode: 0
Status:   OK  
PackageFile: GENIE3_1.14.0.tgz
PackageFileSize: 262.4 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf GENIE3.buildbin-libdir && mkdir GENIE3.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GENIE3_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GENIE3.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GENIE3.buildbin-libdir GENIE3_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘GENIE3’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c GENIE3.c -o GENIE3.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o GENIE3.so GENIE3.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.13-bioc/meat/GENIE3.buildbin-libdir/00LOCK-GENIE3/00new/GENIE3/libs
** R
** inst
** byte-compile and prepare package for lazy loading
in method for ‘GENIE3’ with signature ‘"SummarizedExperiment"’: no definition for class “SummarizedExperiment”
in method for ‘GENIE3’ with signature ‘"ExpressionSet"’: no definition for class “ExpressionSet”
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GENIE3)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GENIE3.buildbin-libdir/GENIE3/libs/GENIE3.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "GENIE3.buildbin-libdir/GENIE3/libs/GENIE3.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "GENIE3.buildbin-libdir/GENIE3/libs/GENIE3.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "GENIE3.buildbin-libdir/GENIE3/libs/GENIE3.so"