Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:06:03 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the EMDomics package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EMDomics.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 566/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
EMDomics 2.22.0 (landing page) Sadhika Malladi
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: EMDomics |
Version: 2.22.0 |
Command: C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EMDomics.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings EMDomics_2.22.0.tar.gz |
StartedAt: 2021-10-14 22:42:17 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 22:45:42 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 204.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: EMDomics.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:EMDomics.install-out.txt --library=C:\Users\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings EMDomics_2.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.13-bioc/meat/EMDomics.Rcheck' * using R version 4.1.1 (2021-08-10) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'EMDomics/DESCRIPTION' ... OK * this is package 'EMDomics' version '2.22.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'EMDomics' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE Authors@R field gives more than one person with maintainer role: Sadhika Malladi <contact@sadhikamalladi.com> [aut, cre] Daniel Schmolze <emd@schmolze.com> [aut, cre] * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .cvm_pairwise_q: no visible global function definition for 'combn' .cvm_pairwise_q : <anonymous>: no visible global function definition for 'median' .emd_gene_pairwise: no visible global function definition for 'hist' .emd_pairwise_q: no visible global function definition for 'combn' .emd_pairwise_q : <anonymous>: no visible global function definition for 'median' .ks_pairwise_table: no visible global function definition for 'ks.test' calculate_cvm: no visible global function definition for 'combn' calculate_cvm : <anonymous>: no visible global function definition for 'median' calculate_cvm_gene: no visible global function definition for 'combn' calculate_emd: no visible global function definition for 'combn' calculate_emd : <anonymous>: no visible global function definition for 'median' calculate_emd_gene: no visible global function definition for 'combn' calculate_ks: no visible global function definition for 'combn' calculate_ks : <anonymous>: no visible global function definition for 'p.adjust' calculate_ks : <anonymous>: no visible global function definition for 'median' calculate_ks_gene: no visible global function definition for 'combn' calculate_ks_gene: no visible global function definition for 'ks.test' Undefined global functions or variables: combn hist ks.test median p.adjust Consider adding importFrom("graphics", "hist") importFrom("stats", "ks.test", "median", "p.adjust") importFrom("utils", "combn") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_cvmperms 9.72 0.02 9.73 plot_cvm_density 8.80 0.00 8.79 calculate_cvm 7.96 0.05 8.03 calculate_emd 7.22 0.01 7.23 plot_emd_density 6.89 0.01 6.91 plot_emdperms 5.70 0.02 5.72 plot_cvmnull 5.45 0.00 5.46 ** running examples for arch 'x64' ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_cvmperms 10.58 0.00 10.58 calculate_cvm 10.08 0.00 10.08 plot_emdperms 7.91 0.02 7.92 plot_cvm_density 7.56 0.03 7.59 plot_emd_density 7.26 0.03 7.30 calculate_emd 7.13 0.02 7.14 plot_ks_density 5.67 0.00 5.68 plot_ksperms 5.14 0.02 5.16 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.13-bioc/meat/EMDomics.Rcheck/00check.log' for details.
EMDomics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.13/bioc/src/contrib/EMDomics_2.22.0.tar.gz && rm -rf EMDomics.buildbin-libdir && mkdir EMDomics.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EMDomics.buildbin-libdir EMDomics_2.22.0.tar.gz && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL EMDomics_2.22.0.zip && rm EMDomics_2.22.0.tar.gz EMDomics_2.22.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 95880 100 95880 0 0 476k 0 --:--:-- --:--:-- --:--:-- 480k install for i386 * installing *source* package 'EMDomics' ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'EMDomics' finding HTML links ... done CVMomics html EMDomics html KSomics html calculate_cvm html calculate_cvm_gene html calculate_emd html calculate_emd_gene html calculate_ks html calculate_ks_gene html emdomics-package html plot_cvm_density html plot_cvmnull html plot_cvmperms html plot_emd_density html plot_emdnull html plot_emdperms html plot_ks_density html plot_ksnull html plot_ksperms html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'EMDomics' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'EMDomics' as EMDomics_2.22.0.zip * DONE (EMDomics) * installing to library 'C:/Users/biocbuild/bbs-3.13-bioc/R/library' package 'EMDomics' successfully unpacked and MD5 sums checked
EMDomics.Rcheck/examples_i386/EMDomics-Ex.timings
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EMDomics.Rcheck/examples_x64/EMDomics-Ex.timings
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