Back to Multiple platform build/check report for BioC 3.13 |
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This page was generated on 2021-10-15 15:05:39 -0400 (Fri, 15 Oct 2021).
To the developers/maintainers of the EMDomics package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/EMDomics.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 566/2041 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
EMDomics 2.22.0 (landing page) Sadhika Malladi
| nebbiolo1 | Linux (Ubuntu 20.04.2 LTS) / x86_64 | OK | OK | OK | |||||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |||||||||
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: EMDomics |
Version: 2.22.0 |
Command: /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:EMDomics.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings EMDomics_2.22.0.tar.gz |
StartedAt: 2021-10-14 09:42:32 -0400 (Thu, 14 Oct 2021) |
EndedAt: 2021-10-14 09:44:09 -0400 (Thu, 14 Oct 2021) |
EllapsedTime: 96.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: EMDomics.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD check --install=check:EMDomics.install-out.txt --library=/home/biocbuild/bbs-3.13-bioc/R/library --no-vignettes --timings EMDomics_2.22.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.13-bioc/meat/EMDomics.Rcheck’ * using R version 4.1.1 (2021-08-10) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘EMDomics/DESCRIPTION’ ... OK * this is package ‘EMDomics’ version ‘2.22.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘EMDomics’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Authors@R field gives more than one person with maintainer role: Sadhika Malladi <contact@sadhikamalladi.com> [aut, cre] Daniel Schmolze <emd@schmolze.com> [aut, cre] * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .cvm_pairwise_q: no visible global function definition for ‘combn’ .cvm_pairwise_q : <anonymous>: no visible global function definition for ‘median’ .emd_gene_pairwise: no visible global function definition for ‘hist’ .emd_pairwise_q: no visible global function definition for ‘combn’ .emd_pairwise_q : <anonymous>: no visible global function definition for ‘median’ .ks_pairwise_table: no visible global function definition for ‘ks.test’ calculate_cvm: no visible global function definition for ‘combn’ calculate_cvm : <anonymous>: no visible global function definition for ‘median’ calculate_cvm_gene: no visible global function definition for ‘combn’ calculate_emd: no visible global function definition for ‘combn’ calculate_emd : <anonymous>: no visible global function definition for ‘median’ calculate_emd_gene: no visible global function definition for ‘combn’ calculate_ks: no visible global function definition for ‘combn’ calculate_ks : <anonymous>: no visible global function definition for ‘p.adjust’ calculate_ks : <anonymous>: no visible global function definition for ‘median’ calculate_ks_gene: no visible global function definition for ‘combn’ calculate_ks_gene: no visible global function definition for ‘ks.test’ Undefined global functions or variables: combn hist ks.test median p.adjust Consider adding importFrom("graphics", "hist") importFrom("stats", "ks.test", "median", "p.adjust") importFrom("utils", "combn") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_cvmperms 9.647 0.032 9.679 plot_cvm_density 8.656 0.072 8.729 calculate_cvm 7.782 0.064 7.843 plot_emd_density 6.933 0.052 6.986 plot_emdperms 6.799 0.028 6.828 calculate_emd 5.521 0.033 5.553 plot_cvmnull 5.063 0.024 5.087 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.13-bioc/meat/EMDomics.Rcheck/00check.log’ for details.
EMDomics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.13-bioc/R/bin/R CMD INSTALL EMDomics ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.13-bioc/R/library’ * installing *source* package ‘EMDomics’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EMDomics)
EMDomics.Rcheck/EMDomics-Ex.timings
name | user | system | elapsed | |
calculate_cvm | 7.782 | 0.064 | 7.843 | |
calculate_cvm_gene | 0.006 | 0.000 | 0.006 | |
calculate_emd | 5.521 | 0.033 | 5.553 | |
calculate_emd_gene | 0.002 | 0.002 | 0.005 | |
calculate_ks | 3.075 | 0.100 | 3.175 | |
calculate_ks_gene | 0.01 | 0.00 | 0.01 | |
plot_cvm_density | 8.656 | 0.072 | 8.729 | |
plot_cvmnull | 5.063 | 0.024 | 5.087 | |
plot_cvmperms | 9.647 | 0.032 | 9.679 | |
plot_emd_density | 6.933 | 0.052 | 6.986 | |
plot_emdnull | 4.323 | 0.008 | 4.332 | |
plot_emdperms | 6.799 | 0.028 | 6.828 | |
plot_ks_density | 4.500 | 0.004 | 4.505 | |
plot_ksnull | 3.079 | 0.004 | 3.083 | |
plot_ksperms | 4.009 | 0.004 | 4.013 | |