Julian Flesch
| Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020) |
| URL: https://git.bioconductor.org/packages/waddR |
| Branch: RELEASE_3_10 |
| Last Commit: d2c2b15 |
| Last Changed Date: 2020-03-20 10:26:52 -0400 (Fri, 20 Mar 2020) |
| Back to Multiple platform build/check report for BioC 3.10 |
|
This page was generated on 2020-04-15 12:33:25 -0400 (Wed, 15 Apr 2020).
| Package 1799/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| waddR 1.0.1 Julian Flesch
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: waddR |
| Version: 1.0.1 |
| Command: rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waddR.buildbin-libdir waddR_1.0.1.tar.gz |
| StartedAt: 2020-04-15 09:53:30 -0400 (Wed, 15 Apr 2020) |
| EndedAt: 2020-04-15 09:54:58 -0400 (Wed, 15 Apr 2020) |
| EllapsedTime: 88.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: waddR_1.0.1.zip |
| PackageFileSize: 721.5 KiB |
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### Running command:
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### rm -rf waddR.buildbin-libdir && mkdir waddR.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=waddR.buildbin-libdir waddR_1.0.1.tar.gz
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install for i386
* installing *source* package 'waddR' ...
** using staged installation
** libs
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c wasserstein.cpp -o wasserstein.o
wasserstein.cpp: In function 'std::vector<double> rep_weighted(std::vector<double>, std::vector<int, std::allocator<int> >)':
wasserstein.cpp:348:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In function 'std::vector<int, std::allocator<int> > interval_table(const std::vector<double>&, const std::vector<double>&, int)':
wasserstein.cpp:584:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
while (data_i < datavec.size()) {
^
wasserstein.cpp: In function 'double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)':
wasserstein.cpp:1094:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) { x[i] = x_[i];}
^
wasserstein.cpp:1095:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int j=0; j<y.size(); j++) { y[j] = y_[j];}
^
wasserstein.cpp: In instantiation of 'double cor(const std::vector<_RealType>&, const std::vector<_RealType>&, double, double) [with T = double]':
wasserstein.cpp:720:49: required from here
wasserstein.cpp:439:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++){
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> operator-(const std::vector<_RealType>&, const std::vector<_RealType>&) [with T = double]':
wasserstein.cpp:782:44: required from here
wasserstein.cpp:121:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> cumSum(const std::vector<_RealType>&, int) [with T = double]':
wasserstein.cpp:890:17: required from here
wasserstein.cpp:472:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
int upper = ((last_index > 0) && (last_index <= x.size())
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> operator*(const std::vector<_RealType>&, const std::vector<_RealType>&) [with T = double]':
wasserstein.cpp:918:62: required from here
wasserstein.cpp:101:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> operator+(std::vector<_RealType>, std::vector<_RealType>) [with T = double]':
wasserstein.cpp:939:15: required from here
wasserstein.cpp:53:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> operator/(const std::vector<_RealType>&, const std::vector<_RealType>&) [with T = double]':
wasserstein.cpp:1052:15: required from here
wasserstein.cpp:169:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> quantile(const std::vector<_RealType>&, std::vector<double>, int) [with T = double]':
wasserstein.cpp:1168:27: required from here
wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable]
T max_x = x_sorted[n-1];
^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o waddR.dll tmp.def RcppExports.o wasserstein.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/waddR.buildbin-libdir/00LOCK-waddR/00new/waddR/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'waddR'
finding HTML links ... done
brownianBridgeEmpcdf.url html
dot-brownianBridgeEmpcdf html
dot-combinePVal html
dot-fishersCombinedPval html
dot-quantileCorrelation html
dot-relativeError html
dot-testWass html
dot-wassPermProcedure html
dot-wassersteinTestAsy html
dot-wassersteinTestSp html
permutations html
squared_wass_approx html
squared_wass_decomp html
testZeroes-method html
waddR-package html
wasserstein.sc-method html
wasserstein.test html
wasserstein_metric html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'waddR' ...
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11 -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.10-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=core2 -c wasserstein.cpp -o wasserstein.o
wasserstein.cpp: In function 'std::vector<double> rep_weighted(std::vector<double>, std::vector<int, std::allocator<int> >)':
wasserstein.cpp:348:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for(int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In function 'std::vector<int, std::allocator<int> > interval_table(const std::vector<double>&, const std::vector<double>&, int)':
wasserstein.cpp:584:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
while (data_i < datavec.size()) {
^
wasserstein.cpp: In function 'double cor_test_export(Rcpp::NumericVector, Rcpp::NumericVector)':
wasserstein.cpp:1094:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) { x[i] = x_[i];}
^
wasserstein.cpp:1095:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int j=0; j<y.size(); j++) { y[j] = y_[j];}
^
wasserstein.cpp: In instantiation of 'double cor(const std::vector<_RealType>&, const std::vector<_RealType>&, double, double) [with T = double]':
wasserstein.cpp:720:49: required from here
wasserstein.cpp:439:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++){
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> operator-(const std::vector<_RealType>&, const std::vector<_RealType>&) [with T = double]':
wasserstein.cpp:782:44: required from here
wasserstein.cpp:121:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> cumSum(const std::vector<_RealType>&, int) [with T = double]':
wasserstein.cpp:890:17: required from here
wasserstein.cpp:472:47: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
int upper = ((last_index > 0) && (last_index <= x.size())
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> operator*(const std::vector<_RealType>&, const std::vector<_RealType>&) [with T = double]':
wasserstein.cpp:918:62: required from here
wasserstein.cpp:101:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> operator+(std::vector<_RealType>, std::vector<_RealType>) [with T = double]':
wasserstein.cpp:939:15: required from here
wasserstein.cpp:53:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> operator/(const std::vector<_RealType>&, const std::vector<_RealType>&) [with T = double]':
wasserstein.cpp:1052:15: required from here
wasserstein.cpp:169:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (int i=0; i<x.size(); i++) {
^
wasserstein.cpp: In instantiation of 'std::vector<_RealType> quantile(const std::vector<_RealType>&, std::vector<double>, int) [with T = double]':
wasserstein.cpp:1168:27: required from here
wasserstein.cpp:501:4: warning: unused variable 'max_x' [-Wunused-variable]
T max_x = x_sorted[n-1];
^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o waddR.dll tmp.def RcppExports.o wasserstein.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU~1/BBS-3~1.10-/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.10-bioc/meat/waddR.buildbin-libdir/waddR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'waddR' as waddR_1.0.1.zip
* DONE (waddR)