Multiple platform build/check report for BioC 3.10 - BUILD report for flipflop on tokay1

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### Running command:
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###   chmod a+r flipflop -R && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data flipflop
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* checking for file 'flipflop/DESCRIPTION' ... OK
* preparing 'flipflop':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package 'flipflop' ...
** using staged installation
** libs
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I. -Ispams/linalg -Ispams/prox -Ispams/decomp -Ispams/dags -fopenmp   -DUSE_BLAS_LIB -DNDEBUG   -O2 -Wall  -mtune=core2 -c FileSplitter.cpp -o FileSplitter.o
In file included from FileSplitter.cpp:1:0:
FileSplitter.h: In member function 'void FileSplitter::endWritingInstance()':
FileSplitter.h:52:64: warning: ISO C++ says that these are ambiguous, even though the worst conversion for the first is better than the worst conversion for the second:
       instance_info.size = instance_os.tellp() - instance_info.offset; // attention piquet !!!
                                                                ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/iosfwd:40:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/ios:38,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/ostream:38,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/iostream:39,
                 from FileSplitter.h:2,
                 from FileSplitter.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/bits/postypes.h:192:7: note: candidate 1: std::fpos<_StateT> std::fpos<_StateT>::operator-(std::streamoff) const [with _StateT = int; std::streamoff = long long int]
       operator-(streamoff __off) const
       ^
In file included from FileSplitter.cpp:1:0:
FileSplitter.h:52:64: note: candidate 2: operator-(std::streamoff {aka long long int}, off_t {aka long int}) <built-in>
       instance_info.size = instance_os.tellp() - instance_info.offset; // attention piquet !!!
                                                                ^
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c R_init_flipflop.c -o R_init_flipflop.o
C:/Rtools/mingw_64/bin/g++ -std=gnu++11  -I"C:/Users/BIOCBU~1/BBS-3~1.10-/R/include" -DNDEBUG     -I"C:/extsoft/include"  -I. -Ispams/linalg -Ispams/prox -Ispams/decomp -Ispams/dags -fopenmp   -DUSE_BLAS_LIB -DNDEBUG   -O2 -Wall  -mtune=core2 -c align.cpp -o align.o
In file included from align.h:5:0,
                 from align.cpp:5:
commontype.h: In function 'range_t make_range_t(long int, long int)':
commontype.h:18:75: error: no matching function for call to 'make_pair(long int&, long int&)'
 inline range_t make_range_t(long a,long b){return make_pair<long,long>(a,b);}
                                                                           ^
commontype.h:18:75: note: candidate is:
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/bits/stl_algobase.h:64:0,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/bits/char_traits.h:39,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/ios:40,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/ostream:38,
                 from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/iostream:39,
                 from align.cpp:1:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/bits/stl_pair.h:276:5: note: template<class _T1, class _T2> constexpr std::pair<typename std::__decay_and_strip<_Tp>::__type, typename std::__decay_and_strip<_T2>::__type> std::make_pair(_T1&&, _T2&&)
     make_pair(_T1&& __x, _T2&& __y)
     ^
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/c++/bits/stl_pair.h:276:5: note:   template argument deduction/substitution failed:
In file included from align.h:5:0,
                 from align.cpp:5:
commontype.h:18:75: note:   cannot convert 'a' (type 'long int') to type 'long int&&'
 inline range_t make_range_t(long a,long b){return make_pair<long,long>(a,b);}
                                                                           ^
align.cpp: In function 'std::ostream& operator<<(std::ostream&, Align&)':
align.cpp:11:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0;i<a.start.size();i++) out<<a.start[i]<<"-"<<a.end[i]<<",";
                ^
align.cpp: In member function 'int Align::getReadLen() const':
align.cpp:19:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
   for(int i=0;i<start.size();i++)
                ^
make: *** [align.o] Error 1
ERROR: compilation failed for package 'flipflop'
* removing 'C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpCAhfW2/Rinste1c5d6b46a1/flipflop'
      -----------------------------------
ERROR: package installation failed
BUILD report for flipflop on tokay1

Summary

Command output
