Back to Multiple platform build/check report for BioC 3.10
ABCDE[F]GHIJKLMNOPQRSTUVWXYZ

BUILD report for flipflop on merida1

This page was generated on 2020-04-15 12:39:25 -0400 (Wed, 15 Apr 2020).

Package 577/1823HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flipflop 1.24.0
Elsa Bernard
Snapshot Date: 2020-04-14 16:46:13 -0400 (Tue, 14 Apr 2020)
URL: https://git.bioconductor.org/packages/flipflop
Branch: RELEASE_3_10
Last Commit: a968570
Last Changed Date: 2019-10-29 13:08:50 -0400 (Tue, 29 Oct 2019)
malbec1 Linux (Ubuntu 18.04.4 LTS) / x86_64  ERROR  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  ERROR  ERROR  skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  ERROR [ ERROR ] skipped  skipped 

Summary

Package: flipflop
Version: 1.24.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flipflop
StartedAt: 2020-04-14 20:55:36 -0400 (Tue, 14 Apr 2020)
EndedAt: 2020-04-14 20:55:40 -0400 (Tue, 14 Apr 2020)
EllapsedTime: 4.0 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flipflop
###
##############################################################################
##############################################################################


* checking for file ‘flipflop/DESCRIPTION’ ... OK
* preparing ‘flipflop’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘flipflop’ ...
** using staged installation
** libs
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I. -Ispams/linalg -Ispams/prox -Ispams/decomp -Ispams/dags -fopenmp   -DUSE_BLAS_LIB -DNDEBUG -fPIC  -Wall -g -O2  -c FileSplitter.cpp -o FileSplitter.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include  -fPIC  -Wall -g -O2  -c R_init_flipflop.c -o R_init_flipflop.o
clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include -I. -Ispams/linalg -Ispams/prox -Ispams/decomp -Ispams/dags -fopenmp   -DUSE_BLAS_LIB -DNDEBUG -fPIC  -Wall -g -O2  -c align.cpp -o align.o
In file included from align.cpp:5:
In file included from ./align.h:5:
./commontype.h:18:51: error: no matching function for call to 'make_pair'
inline range_t make_range_t(long a,long b){return make_pair<long,long>(a,b);}
                                                  ^~~~~~~~~~~~~~~~~~~~
/usr/local/clang7/include/c++/v1/utility:641:1: note: candidate function template not viable: no known conversion from 'long' to 'long &&' for 1st argument
make_pair(_T1&& __t1, _T2&& __t2)
^
1 error generated.
make: *** [align.o] Error 1
ERROR: compilation failed for package ‘flipflop’
* removing ‘/private/tmp/RtmpTk1Byx/Rinstabc35c211c14/flipflop’
      -----------------------------------
ERROR: package installation failed