Back to Multiple platform build/check report for BioC 3.10 |
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This page was generated on 2020-04-15 12:21:12 -0400 (Wed, 15 Apr 2020).
Package 208/1823 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
bumphunter 1.28.0 Rafael A. Irizarry
| malbec1 | Linux (Ubuntu 18.04.4 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: bumphunter |
Version: 1.28.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/bumphunter_1.28.0.tar.gz && rm -rf bumphunter.buildbin-libdir && mkdir bumphunter.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bumphunter.buildbin-libdir bumphunter_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL bumphunter_1.28.0.zip && rm bumphunter_1.28.0.tar.gz bumphunter_1.28.0.zip |
StartedAt: 2020-04-14 20:30:58 -0400 (Tue, 14 Apr 2020) |
EndedAt: 2020-04-14 20:32:05 -0400 (Tue, 14 Apr 2020) |
EllapsedTime: 66.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.10/bioc/src/contrib/bumphunter_1.28.0.tar.gz && rm -rf bumphunter.buildbin-libdir && mkdir bumphunter.buildbin-libdir && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=bumphunter.buildbin-libdir bumphunter_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.10-bioc\R\bin\R.exe CMD INSTALL bumphunter_1.28.0.zip && rm bumphunter_1.28.0.tar.gz bumphunter_1.28.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 2273k 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 2273k 100 2273k 0 0 4717k 0 --:--:-- --:--:-- --:--:-- 4746k install for i386 * installing *source* package 'bumphunter' ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'bumphunter' finding HTML links ... done TT html annotateNearest html Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpWQTopZ/R.INSTALL2a7068de667e/bumphunter/man/annotateNearest.Rd:31: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpWQTopZ/R.INSTALL2a7068de667e/bumphunter/man/annotateNearest.Rd:34: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpWQTopZ/R.INSTALL2a7068de667e/bumphunter/man/annotateNearest.Rd:59: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic annotateTranscripts html Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpWQTopZ/R.INSTALL2a7068de667e/bumphunter/man/annotateTranscripts.Rd:39: file link 'mapIds' in package 'AnnotationDbi' does not exist and so has been treated as a topic bumphunter html clusterMaker html dummyData html getSegments html locfitByCluster html loessByCluster html matchGenes html Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpWQTopZ/R.INSTALL2a7068de667e/bumphunter/man/matchGenes.Rd:41: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.10-bioc/tmpdir/RtmpWQTopZ/R.INSTALL2a7068de667e/bumphunter/man/matchGenes.Rd:55: file link 'nearest' in package 'IRanges' does not exist and so has been treated as a topic regionFinder html runmedByCluster html smoother html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path install for x64 * installing *source* package 'bumphunter' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'bumphunter' as bumphunter_1.28.0.zip * DONE (bumphunter) * installing to library 'C:/Users/biocbuild/bbs-3.10-bioc/R/library' package 'bumphunter' successfully unpacked and MD5 sums checked