Package: plateCore

Version: 1.11.0

Command: mkdir plateCore.buildbin-libdir && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=plateCore.buildbin-libdir plateCore_1.11.0.tar.gz >plateCore-install.out 2>&1 && D:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --library=plateCore.buildbin-libdir --install="check:plateCore-install.out" --force-multiarch --no-vignettes --timings plateCore_1.11.0.tar.gz && mv plateCore.buildbin-libdir/* plateCore.Rcheck/ && rmdir plateCore.buildbin-libdir

StartedAt: 2011-07-07 05:56:40 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 06:02:31 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 350.9 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/plateCore.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-20 r56188)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the name space can be loaded with stated dependencies ... OK
** checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... NOTE
  
  Note: significantly better compression could be obtained
        by using tools::resaveRdaFiles() or R CMD build --resave-data
                old_size new_size compress
  plateCore.rda    1.8Mb    948Kb       xz
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'plateCoreVig.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

add DLL for x64

* installing *source* package 'plateCore' ...
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
* MD5 sums
packaged installation of 'plateCore' as plateCore_1.11.0.zip

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	3.42	0.04	3.47
applyControlGates-methods	14.97	0.00	14.97
compensate-methods	5.49	0.02	5.51
compensationSet	0.22	0.02	0.23
densityplot-methods	1.58	0.00	1.57
fixAutoFl-methods	5.49	0.00	5.49
flowPlate-class	3.71	0.00	3.72
flowPlate-method	4.70	0.00	4.69
fpbind-methods	7.84	0.00	7.85
getGroups-methods	1.47	0.00	1.47
gutterPlot-methods	1.36	0.00	1.35
mfiPlot-methods	14.82	0.00	14.82
on-methods	9.51	0.01	9.77
panel.densityplot.flowPlate	1.66	0.00	1.67
panel.xyplot.flowPlate	1.51	0.00	1.53
plateCore-package	2.96	0.00	2.97
plateSet-methods	2.98	0.00	2.98
plotPlate-methods	3.57	0.02	3.58
prepanel.densityplot.flowPlate	1.47	0.00	1.47
prepanel.xyplot.flowPlate	1.47	0.00	1.46
setControlGates-methods	3.53	0.00	3.53
summaryStats-methods	15.75	0.00	15.77
wellAnnotation-methods	1.53	0.00	1.53
xyplot-methods	1.48	0.01	1.50