Package: plateCore

Version: 1.11.0

Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch plateCore_1.11.0.tar.gz

StartedAt: 2011-07-07 03:09:26 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 03:12:43 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 196.8 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/plateCore.Rcheck'
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56036)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'plateCoreVig.Rnw' 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	3.99	0.00	4.00
applyControlGates-methods	14.32	0.00	14.49
compensate-methods	5.21	0.01	5.25
compensationSet	0.39	0.00	0.39
densityplot-methods	1.53	0.00	1.53
fixAutoFl-methods	5.73	0.00	5.83
flowPlate-class	3.30	0.00	3.33
flowPlate-method	3.36	0.00	3.37
fpbind-methods	7.27	0.02	7.33
getGroups-methods	1.45	0.00	1.45
gutterPlot-methods	1.48	0.00	1.49
mfiPlot-methods	14.77	0.00	14.89
on-methods	9.36	0.00	9.62
panel.densityplot.flowPlate	1.75	0.00	1.77
panel.xyplot.flowPlate	1.59	0.02	1.65
plateCore-package	3.02	0.00	3.08
plateSet-methods	3.14	0.00	3.20
plotPlate-methods	3.59	0.00	3.64
prepanel.densityplot.flowPlate	1.61	0.02	1.64
prepanel.xyplot.flowPlate	1.47	0.00	1.49
setControlGates-methods	3.53	0.00	3.59
summaryStats-methods	14.49	0.00	14.66
wellAnnotation-methods	1.34	0.01	1.37
xyplot-methods	1.58	0.03	1.63