Package: phenoTest

Version: 1.1.1

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data phenoTest

StartedAt: 2011-07-07 00:43:43 -0700 (Thu, 07 Jul 2011)

EndedAt: 2011-07-07 00:44:23 -0700 (Thu, 07 Jul 2011)

EllapsedTime: 40.0 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

* checking for file 'phenoTest/DESCRIPTION' ... OK
* preparing 'phenoTest':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
      -----------------------------------
* installing *source* package 'phenoTest' ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c getEs.c -o getEs.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o phenoTest.so getEs.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/Rtmplq81O7/Rinst30c893df/phenoTest/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: DBI

** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'phenoTest.Rnw' 
** testing if installed package can be loaded
Error in namespaceExport(ns, exports) : 
  undefined exports: getEsPositions, findCopyNumber, genesInArea
Error: loading failed
Execution halted
ERROR: loading failed
* removing '/private/tmp/Rtmplq81O7/Rinst30c893df/phenoTest'
      -----------------------------------
ERROR: package installation failed