proteomics
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see proteomics.
Mass spectrometry and proteomics data analysis
Bioconductor version: 3.9
This workflow illustrates R / Bioconductor infrastructure for proteomics. Topics covered focus on support for open community-driven formats for raw data and identification results, packages for peptide-spectrum matching, data processing and analysis.
Author: Laurent Gatto [aut, cre]
Maintainer: Laurent Gatto <lg390 at cam.ac.uk>
citation("proteomics")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("proteomics")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("proteomics")| An R/Bioc proteomics workflow | HTML | R Script |
Details
| biocViews | ImmunoOncologyWorkflow, ProteomicsWorkflow, Workflow |
| Version | 1.8.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), mzR, mzID, MSnID, MSnbase, rpx, MLInterfaces, pRoloc, pRolocdata, MSGFplus, rols, hpar |
| Imports | |
| System Requirements | |
| URL | https://www.bioconductor.org/help/workflows/proteomics/ |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | proteomics_1.8.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | |
| Source Repository | git clone https://git.bioconductor.org/packages/proteomics |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/proteomics |
| Package Short Url | https://bioconductor.org/packages/proteomics/ |
| Package Downloads Report | Download Stats |