rols
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see rols.
An R interface to the Ontology Lookup Service
Bioconductor version: 3.9
The rols package is an interface to the Ontology Lookup Service (OLS) to access and query hundred of ontolgies directly from R.
Author: Laurent Gatto [aut, cre], Tiage Chedraoui Silva [ctb]
Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>
Citation (from within R, enter
citation("rols")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rols")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rols")| An R interface to the Ontology Lookup Service | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, GO, ImmunoOncology, MassSpectrometry, Software |
| Version | 2.12.2 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL-2 |
| Depends | methods |
| Imports | httr, progress, jsonlite, utils, Biobase, BiocGenerics(>= 0.23.1) |
| System Requirements | |
| URL | http://lgatto.github.com/rols/ |
| Bug Reports | https://github.com/lgatto/rols/issues |
See More
| Suggests | GO.db, knitr (>= 1.1.0), BiocStyle(>= 2.5.19), testthat, lubridate, DT, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | proteomics |
| Imports Me | |
| Suggests Me | MSnbase, RforProteomics |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rols_2.12.2.tar.gz |
| Windows Binary | rols_2.12.2.zip |
| Mac OS X 10.11 (El Capitan) | rols_2.12.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rols |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rols |
| Bioc Package Browser | https://code.bioconductor.org/browse/rols/ |
| Package Short Url | https://bioconductor.org/packages/rols/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |