sevenbridges
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see sevenbridges.
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R
Bioconductor version: 3.9
R client and utilities for Seven Bridges platform API, from Cancer Genomics Cloud to other Seven Bridges supported platforms.
Author: Nan Xiao [aut, cre], Tengfei Yin [aut], Emile Young [ctb], Dusan Randjelovic [ctb], Seven Bridges Genomics [cph, fnd]
Maintainer: Nan Xiao <nan.xiao at sevenbridges.com>
citation("sevenbridges")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sevenbridges")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sevenbridges")| Complete Guide for Seven Bridges API R Client | HTML | R Script |
| Creating Your Docker Container and Command Line Interface (with docopt) | HTML | R Script |
| Describe and Execute CWL Tools/Workflows in R | HTML | R Script |
| Find Data on CGC via Data Browser and Datasets API | HTML | R Script |
| IDE Container: RStudio Server, Shiny Server, and More | HTML | R Script |
| Master Tutorial: Use R for Cancer Genomics Cloud | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Software, ThirdPartyClient |
| Version | 1.14.1 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | Apache License 2.0 | file LICENSE |
| Depends | methods, utils, stats |
| Imports | httr, jsonlite, yaml, objectProperties, stringr, S4Vectors, docopt, curl, uuid, dplyr |
| System Requirements | |
| URL | https://www.sevenbridges.com https://sbg.github.io/sevenbridges-r/ https://github.com/sbg/sevenbridges-r |
| Bug Reports | https://github.com/sbg/sevenbridges-r/issues |
See More
| Suggests | knitr, rmarkdown, testthat, readr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sevenbridges_1.14.1.tar.gz |
| Windows Binary | sevenbridges_1.14.1.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | sevenbridges_1.14.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sevenbridges |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sevenbridges |
| Bioc Package Browser | https://code.bioconductor.org/browse/sevenbridges/ |
| Package Short Url | https://bioconductor.org/packages/sevenbridges/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |