cn.farms
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cn.farms.
cn.FARMS - factor analysis for copy number estimation
Bioconductor version: 3.9
This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.
Author: Andreas Mitterecker, Djork-Arne Clevert
Maintainer: Andreas Mitterecker <mitterecker at bioinf.jku.at>
citation("cn.farms")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("cn.farms")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cn.farms")| cn.farms: Manual for the R package | R Script | |
| Reference Manual |
Details
| biocViews | CopyNumberVariation, Microarray, Software |
| Version | 1.32.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | LGPL (>= 2.0) |
| Depends | R (>= 3.0), Biobase, methods, ff, oligoClasses, snow |
| Imports | DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice |
| System Requirements | |
| URL | http://www.bioinf.jku.at/software/cnfarms/cnfarms.html |
See More
| Suggests | pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cn.farms_1.32.0.tar.gz |
| Windows Binary | cn.farms_1.32.0.zip |
| Mac OS X 10.11 (El Capitan) | cn.farms_1.32.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cn.farms |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cn.farms |
| Bioc Package Browser | https://code.bioconductor.org/browse/cn.farms/ |
| Package Short Url | https://bioconductor.org/packages/cn.farms/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |