affxparser
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see affxparser.
Affymetrix File Parsing SDK
Bioconductor version: 3.9
Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.
Author: Henrik Bengtsson [aut], James Bullard [aut], Robert Gentleman [ctb], Kasper Daniel Hansen [aut, cre], Jim Hester [ctb], Martin Morgan [ctb]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
citation("affxparser")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("affxparser")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | DataImport, Infrastructure, Microarray, OneChannel, ProprietaryPlatforms, Software |
| Version | 1.56.0 |
| In Bioconductor since | BioC 1.7 (R-2.2) (18.5 years) |
| License | LGPL (>= 2) |
| Depends | R (>= 2.14.0) |
| Imports | |
| System Requirements | |
| URL | https://github.com/HenrikBengtsson/affxparser |
| Bug Reports | https://github.com/HenrikBengtsson/affxparser/issues |
See More
| Suggests | R.oo (>= 1.22.0), R.utils (>= 2.7.0), AffymetrixDataTestFiles |
| Linking To | |
| Enhances | |
| Depends On Me | ITALICS, pdInfoBuilder, rMAT, Starr |
| Imports Me | affyILM, cn.farms, crossmeta, EventPointer, GeneRegionScan, ITALICS, oligo, rMAT |
| Suggests Me | TIN |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | affxparser_1.56.0.tar.gz |
| Windows Binary | affxparser_1.56.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | affxparser_1.56.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/affxparser |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/affxparser |
| Bioc Package Browser | https://code.bioconductor.org/browse/affxparser/ |
| Package Short Url | https://bioconductor.org/packages/affxparser/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |