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tracktables

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see tracktables.

Build IGV tracks and HTML reports


Bioconductor version: 3.7

Methods to create complex IGV genome browser sessions and dynamic IGV reports in HTML pages.

Author: Tom Carroll, Sanjay Khadayate, Anne Pajon, Ziwei Liang

Maintainer: Tom Carroll <tc.infomatics at gmail.com>

Citation (from within R, enter citation("tracktables")):

Installation

To install this package, start R (version "3.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tracktables")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tracktables")
Creating IGV HTML reports with tracktables PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews ReportWriting, Sequencing, Software
Version 1.14.0
In Bioconductor since BioC 3.0 (R-3.1) (9.5 years)
License GPL (>= 3)
Depends R (>= 3.0.0)
Imports IRanges, GenomicRanges, XVector, Rsamtools, XML, tractor.base, stringr, RColorBrewer, methods
System Requirements
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Suggests knitr, BiocStyle
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package tracktables_1.14.0.tar.gz
Windows Binary tracktables_1.14.0.zip
Mac OS X 10.11 (El Capitan) tracktables_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/tracktables
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/tracktables
Package Short Url https://bioconductor.org/packages/tracktables/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.7 Source Archive